Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS335A08f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_07_0116 - 13022648-13022701,13022781-13022835,13023050-130231... 278 2e-75
12_02_0617 + 21256745-21256943,21257454-21257647,21257836-212580... 30 0.025
07_01_0173 - 1212858-1213805,1214982-1215642,1215699-1215724,121... 30 0.98
03_06_0333 - 33204345-33204803 29 1.7
12_01_1076 + 11184047-11184270,11186178-11186352,11186554-111866... 29 3.0
07_01_1025 + 8861153-8861376,8861929-8863027 29 3.0
05_03_0373 - 13194723-13195847,13196219-13196809 29 3.0
01_01_0367 + 2872650-2873045,2873800-2873940,2874255-2874364,287... 29 3.0
02_01_0545 + 3996568-3996645,3998061-3998168,3998409-3998493,399... 28 4.0
03_05_0168 - 21466431-21466445,21467053-21467160,21467222-214673... 28 5.2
12_02_0169 + 14835108-14835542 27 6.9
07_03_1614 + 28152812-28153204,28153301-28153585,28153676-281539... 27 6.9
07_03_1567 - 27772815-27773302,27773471-27773561,27773641-277739... 27 6.9
01_07_0257 - 42343493-42343528,42344215-42344271,42344272-423443... 27 6.9
09_06_0106 - 20898480-20898680,20898762-20898864,20898953-208990... 27 9.1
08_02_0697 + 20144063-20144341,20144755-20145366 27 9.1
03_05_0031 + 20040889-20041592,20041932-20041977 27 9.1
03_03_0256 + 15898702-15900420 27 9.1
01_06_1608 - 38612754-38616947,38617030-38617095 27 9.1
01_01_0115 - 856957-858055,858479-858538,858802-859583 27 9.1
>10_07_0116 -
13022648-13022701,13022781-13022835,13023050-13023175,
13023274-13023340,13024104-13024200,13024362-13024461,
13024527-13024611,13024679-13024755,13024888-13024926,
13025001-13025038,13025118-13025208,13025536-13025628,
13025726-13025781,13025844-13025915,13026078-13026134,
13026397-13026495,13026599-13026964
Length = 523
Score = 278 bits (681), Expect = 2e-75
Identities = 119/169 (70%), Positives = 145/169 (85%)
Frame = +1
Query: 1 KPYNFDALGQPPECGHLHPLLKVRSEFREIFLEMGFTEMPTNKYIESSFWNFDALFQPQQ 180
K YNF A GQP G++ PLL+VR E + IFL+MGFTEMPTN Y+ESSFWNFDALFQPQQ
Sbjct: 257 KDYNFGAQGQPIAIGYVQPLLEVREEIQNIFLQMGFTEMPTNNYVESSFWNFDALFQPQQ 316
Query: 181 HPARDAHDTFFMSSPAATTEFPMEYLERVKKVHSKGGYGSQGYRYDWKIEEAQKNLLRTH 360
HPARD+HDTFF+ +PAAT + P +YLE+VK+VH +GGYGS+GY YDWK +EA+KNLLRTH
Sbjct: 317 HPARDSHDTFFLEAPAATKQLPEDYLEKVKEVHQRGGYGSKGYGYDWKRDEAEKNLLRTH 376
Query: 361 TTAVSARMLYRLAQQPEFTPQKYFSIDKVFRNETLDATHLAEFHQVEGV 507
TTAVS RMLY+LAQ+ F P++Y+SID+VFRNE +D THLAEFHQ+EG+
Sbjct: 377 TTAVSTRMLYKLAQEKPFAPKRYYSIDRVFRNEAVDRTHLAEFHQIEGM 425
>12_02_0617 +
21256745-21256943,21257454-21257647,21257836-21258042,
21258115-21258232,21258325-21258401,21258513-21258692,
21259312-21259356,21260309-21260413,21261115-21261261
Length = 423
Score = 29.9 bits (64), Expect(2) = 0.025
Identities = 18/55 (32%), Positives = 30/55 (54%)
Frame = +1
Query: 340 KNLLRTHTTAVSARMLYRLAQQPEFTPQKYFSIDKVFRNETLDATHLAEFHQVEG 504
+ +LR HT+A A +L + T + V+R +++D+TH FHQ+EG
Sbjct: 156 QTVLRCHTSAHQAELL-----RDGHT--HFLVTGDVYRRDSIDSTHYPCFHQMEG 203
Score = 24.6 bits (51), Expect(2) = 0.025
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = +1
Query: 151 NFDALFQPQQHPARDAHDTFFMSS 222
NFD + P H +R +DT+++ +
Sbjct: 132 NFDDVLVPADHVSRSYNDTYYVDA 155
>07_01_0173 -
1212858-1213805,1214982-1215642,1215699-1215724,
1216037-1216121,1216382-1216404,1216463-1216465
Length = 581
Score = 30.3 bits (65), Expect = 0.98
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +1
Query: 385 LYRLAQQPEFTPQKYFSIDKVFRNETLDATHL 480
L+R A +PEF+ Q S + +FR TL+A +L
Sbjct: 389 LFRQASEPEFSEQSSDSKEVIFRQITLEADNL 420
>03_06_0333 - 33204345-33204803
Length = 152
Score = 29.5 bits (63), Expect = 1.7
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Frame = -1
Query: 521 PRSATTPSTWWNSARWVASRVSL-RNTLSMLKYFCGVNSG---CCASLYSILALTAVVCV 354
P A+TPST +S A ++ + N L ++K G + CC+ L ++ L AVVC+
Sbjct: 14 PTPASTPSTGLSSCPRDALKLRVCANVLGLVKAKVGAVAPYEPCCSLLDGLVDLDAVVCL 73
Query: 353 RSR 345
+R
Sbjct: 74 CTR 76
>12_01_1076 +
11184047-11184270,11186178-11186352,11186554-11186637,
11186712-11186953,11187029-11187266,11187814-11187893,
11187968-11188052,11188148-11188279,11188358-11188471,
11189550-11189594,11189840-11189924,11190043-11190102,
11190178-11190317
Length = 567
Score = 28.7 bits (61), Expect = 3.0
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
Frame = +3
Query: 294 WLPGLQIRLEDRGGAEEPAADAHDGG-----QRQDAVQTRAATRVHSAE 425
WL LQ R +DRG P A DG ++A+ + AT+V +A+
Sbjct: 7 WLQKLQPRDKDRGKPASPTAARKDGAAAMAEDGEEAISSTTATKVAAAK 55
>07_01_1025 + 8861153-8861376,8861929-8863027
Length = 440
Score = 28.7 bits (61), Expect = 3.0
Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Frame = +3
Query: 144 ILEL*CTVPTSTAPSQGCSRHILYVLACCHHGVPHGIPGEGEEG--AQQRWIWLPGLQIR 317
+L L C P T P+ S + Y+ + +PG G+ + +W+W PG +R
Sbjct: 41 LLHLLCCAPAGTRPAAAFSPLLQYINNT--YSFVSTVPGVGKSCNYSDGKWVWAPGHVLR 98
>05_03_0373 - 13194723-13195847,13196219-13196809
Length = 571
Score = 28.7 bits (61), Expect = 3.0
Identities = 22/64 (34%), Positives = 28/64 (43%)
Frame = +3
Query: 231 HHGVPHGIPGEGEEGAQQRWIWLPGLQIRLEDRGGAEEPAADAHDGGQRQDAVQTRAATR 410
HH V G+ +G+ G +R WL R+E GG E +G R A AA
Sbjct: 108 HHAVRVGLRVDGDGGDDERGSWLDCGAARVEVGGGWAE-----INGAFRLRASPRVAAVH 162
Query: 411 VHSA 422
VH A
Sbjct: 163 VHGA 166
>01_01_0367 +
2872650-2873045,2873800-2873940,2874255-2874364,
2875279-2875390,2875959-2876030,2876605-2876696,
2877116-2877236,2877712-2877834,2877935-2878130,
2878221-2878408,2878553-2878624,2879336-2879434,
2880027-2880107,2880337-2880405,2880730-2880787,
2881181-2881347
Length = 698
Score = 28.7 bits (61), Expect = 3.0
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 8/56 (14%)
Frame = +1
Query: 370 VSARMLYRLAQQPEFTPQ--------KYFSIDKVFRNETLDATHLAEFHQVEGVVA 513
V M Y L Q P+ Q KY+ I + FR+E L A EF Q++ +A
Sbjct: 276 VQPGMFYALPQSPQLFKQMLMVSGFEKYYQIARCFRDEDLRADRQPEFTQLDMEIA 331
>02_01_0545 +
3996568-3996645,3998061-3998168,3998409-3998493,
3998789-3999024,3999250-3999423,3999510-3999557,
3999659-3999718,3999815-3999901,4000007-4000095,
4000209-4000300,4001110-4001171,4001271-4001420,
4001507-4001722
Length = 494
Score = 28.3 bits (60), Expect = 4.0
Identities = 13/52 (25%), Positives = 24/52 (46%)
Frame = +1
Query: 361 TTAVSARMLYRLAQQPEFTPQKYFSIDKVFRNETLDATHLAEFHQVEGVVAD 516
T AV ++ LAQ P + +D V NET++ L + + ++ +
Sbjct: 279 TAAVLTWSVFLLAQNPSKMRKAQAEVDSVLSNETINVDQLKKLEYIRLIIVE 330
>03_05_0168 -
21466431-21466445,21467053-21467160,21467222-21467365,
21467778-21467846,21467928-21468071,21468409-21468565,
21468671-21468767,21469015-21469297,21469382-21469507,
21470098-21470178,21471990-21472072,21472393-21472478,
21473329-21473422,21473516-21473681,21473777-21473851,
21474082-21474157,21474259-21474347
Length = 630
Score = 27.9 bits (59), Expect = 5.2
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 424 KYFSIDKVFRNETLDATHLAEFHQVEGVVA 513
+ + I K FRNE +D TH EF E +A
Sbjct: 341 RVYEIGKQFRNEGIDLTHNPEFTTCEFYMA 370
>12_02_0169 + 14835108-14835542
Length = 144
Score = 27.5 bits (58), Expect = 6.9
Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Frame = +3
Query: 255 PGEGEEGAQQRWIWLPGLQIRLEDRGGAEEPAADAH-DGGQRQDAVQTR 398
P EG EG ++ + PG E+ GAE A DG AV R
Sbjct: 28 PREGREGGKEATVHTPGATTATEEAAGAEGGGGAARVDGDGGAPAVGDR 76
>07_03_1614 +
28152812-28153204,28153301-28153585,28153676-28153993,
28154657-28154884,28155390-28155490,28156204-28156321,
28156445-28156726
Length = 574
Score = 27.5 bits (58), Expect = 6.9
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = +1
Query: 55 PLLKVRSEFREIFLEMGFTEMPTNKYIESSFWNFDALFQPQQHPARDAHDTF 210
P++ R+E ++ PT +Y + S +F+PQQ R DTF
Sbjct: 325 PIMPGRTEVEQLHKIFKLCGSPTEEYWKKSKLPHATIFKPQQPYKRRIADTF 376
>07_03_1567 - 27772815-27773302,27773471-27773561,27773641-27773988,
27774929-27775110,27775191-27775368,27775453-27775605,
27775993-27776232,27776369-27776449,27776485-27776730,
27777151-27777240,27777536-27777778,27778365-27778529,
27779017-27779080,27779162-27779286,27779383-27779476,
27779647-27779714,27779798-27779989,27780618-27780752,
27780847-27780934,27781014-27781107,27781484-27781547,
27781657-27781708,27781911-27782014,27782099-27782158,
27782687-27782770,27782892-27783125,27783442-27783864,
27784675-27784736,27784867-27785521
Length = 1700
Score = 27.5 bits (58), Expect = 6.9
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +1
Query: 250 EYLERVKKVHSKGGYGSQG 306
E LER +KV +KGG G +G
Sbjct: 1067 EILERAEKVETKGGEGEEG 1085
>01_07_0257 -
42343493-42343528,42344215-42344271,42344272-42344316,
42344374-42344518,42344606-42344733,42344939-42345044,
42345113-42345189,42345264-42345361,42345945-42346058,
42346154-42346294,42346418-42346502,42346721-42346849
Length = 386
Score = 27.5 bits (58), Expect = 6.9
Identities = 14/57 (24%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Frame = +1
Query: 319 WKIEEAQKNLLRTHTTAVSARMLYRLAQQPEFTPQKYFSIDKV---FRNETLDATHL 480
W K+ + H + +++ ++ QP+F P Y S+D+V R+ L++++L
Sbjct: 2 WGDRTHHKHWNQAHVPSGTSKDKFQAKGQPKFIPDNYSSVDEVTAALRDAGLESSNL 58
>09_06_0106 -
20898480-20898680,20898762-20898864,20898953-20899047,
20899113-20899135,20899725-20899799,20900219-20900267,
20900349-20900414,20901257-20901306,20901688-20901812,
20903488-20903600
Length = 299
Score = 27.1 bits (57), Expect = 9.1
Identities = 22/88 (25%), Positives = 33/88 (37%), Gaps = 3/88 (3%)
Frame = +1
Query: 34 PECGHLHPLLKVRSEFREIFLEMGFTE---MPTNKYIESSFWNFDALFQPQQHPARDAHD 204
P G L K R+IF +MG T+ + + S D Q + HP R D
Sbjct: 124 PREGRLPDAKKGAPHLRDIFYQMGLTDKDIVARGENALSGGHTLDCFSQGKAHPERSGFD 183
Query: 205 TFFMSSPAATTEFPMEYLERVKKVHSKG 288
+ P +F Y + + S+G
Sbjct: 184 GAWTKEP---LKFDNSYFLELLREESEG 208
>08_02_0697 + 20144063-20144341,20144755-20145366
Length = 296
Score = 27.1 bits (57), Expect = 9.1
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Frame = +3
Query: 189 QGCSRHILYVLACCHHGVPHGIPGEGEEGAQQRWIWLPGLQIRLE-DRGGAEEPAADAHD 365
+G + H + C HG G +G + A+QRWI +E +GG AD
Sbjct: 49 KGTNGHSCHHPPCSPHGFSSGGRIDGGKEARQRWICGRLRIAHIEICQGGGRVAGADGGG 108
Query: 366 GG 371
GG
Sbjct: 109 GG 110
>03_05_0031 + 20040889-20041592,20041932-20041977
Length = 249
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -2
Query: 94 RISHGIPTLLSRGDGGDHILVVGLKHQNYMV 2
R SH IP L GDG LV+ + N +V
Sbjct: 94 RYSHSIPQLACPGDGDGEGLVISTRRLNRVV 124
>03_03_0256 + 15898702-15900420
Length = 572
Score = 27.1 bits (57), Expect = 9.1
Identities = 8/24 (33%), Positives = 14/24 (58%)
Frame = +2
Query: 95 WKWVSRRCQQINTLRVHSGTLMHC 166
W W + C++ TL+ H+G + C
Sbjct: 527 WFWDWKSCRRFKTLKCHNGVCIGC 550
>01_06_1608 - 38612754-38616947,38617030-38617095
Length = 1419
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/43 (27%), Positives = 17/43 (39%)
Frame = -2
Query: 313 ICNPGSHIHLCCAPSSPSPGIPWGTPWWQQART*RMCREHPWL 185
+C+P HL P + W PW+ + C PWL
Sbjct: 1367 LCSPDGR-HLAMMPHPERCFMMWQYPWYPKEWQLEKCGPSPWL 1408
>01_01_0115 - 856957-858055,858479-858538,858802-859583
Length = 646
Score = 27.1 bits (57), Expect = 9.1
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +1
Query: 13 FDALGQPPECG-HLHPLLKVRSEFREIFLEMGFTEMPTNKYIESSFWNFDA 162
F G PPECG + L + I ++ G + KY +S+FW DA
Sbjct: 54 FRRRGDPPECGVASYELTCTDDKPATIQIDNGTYLVMDIKYKDSTFWVIDA 104
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,667,421
Number of Sequences: 37544
Number of extensions: 346335
Number of successful extensions: 1344
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1317
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1343
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -