Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS335A08f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000263-6|AAO21394.1| 496|Caenorhabditis elegans Phenylalanyl ... 302 1e-82
AF000263-5|AAG00015.1| 552|Caenorhabditis elegans Phenylalanyl ... 302 1e-82
AL132943-13|CAC14396.3| 458|Caenorhabditis elegans Hypothetical... 31 0.66
AL117207-24|CAB60398.3| 458|Caenorhabditis elegans Hypothetical... 31 0.66
AB096637-1|BAC76737.1| 458|Caenorhabditis elegans mitochondrial... 31 0.66
AL132948-8|CAC51068.1| 230|Caenorhabditis elegans Hypothetical ... 28 3.5
U41105-3|AAX88810.1| 514|Caenorhabditis elegans Lysyl (k) trna ... 27 6.2
U41105-2|AAK68395.1| 596|Caenorhabditis elegans Lysyl (k) trna ... 27 6.2
U41105-1|AAA82396.1| 572|Caenorhabditis elegans Lysyl (k) trna ... 27 6.2
Z92812-3|CAB07282.2| 342|Caenorhabditis elegans Hypothetical pr... 27 8.1
U40423-2|AAA81451.1| 160|Caenorhabditis elegans Hypothetical pr... 27 8.1
U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical pr... 27 8.1
>AF000263-6|AAO21394.1| 496|Caenorhabditis elegans Phenylalanyl (f)
trna synthetaseprotein 1, isoform b protein.
Length = 496
Score = 302 bits (741), Expect = 1e-82
Identities = 136/173 (78%), Positives = 153/173 (88%)
Frame = +1
Query: 1 KPYNFDALGQPPECGHLHPLLKVRSEFREIFLEMGFTEMPTNKYIESSFWNFDALFQPQQ 180
K YNFD+LG P GHLHPL+KVRSEFR+IF MGF+EM TN+Y+ESSFWNFDALFQPQQ
Sbjct: 208 KKYNFDSLGVVPSSGHLHPLMKVRSEFRQIFFSMGFSEMATNRYVESSFWNFDALFQPQQ 267
Query: 181 HPARDAHDTFFMSSPAATTEFPMEYLERVKKVHSKGGYGSQGYRYDWKIEEAQKNLLRTH 360
HPARDAHDTFF+S PA +T+FP +YLERVK VHSKGGYGS GY YDWKIEEAQKN+LRTH
Sbjct: 268 HPARDAHDTFFVSDPAISTKFPEDYLERVKTVHSKGGYGSAGYNYDWKIEEAQKNVLRTH 327
Query: 361 TTAVSARMLYRLAQQPEFTPQKYFSIDKVFRNETLDATHLAEFHQVEGVVADR 519
TTAVSAR LY+LAQ+ F P K FSID+VFRNETLDATHLAEFHQVEGV+A++
Sbjct: 328 TTAVSARQLYQLAQE-GFRPSKLFSIDRVFRNETLDATHLAEFHQVEGVIAEK 379
>AF000263-5|AAG00015.1| 552|Caenorhabditis elegans Phenylalanyl (f)
trna synthetaseprotein 1, isoform a protein.
Length = 552
Score = 302 bits (741), Expect = 1e-82
Identities = 136/173 (78%), Positives = 153/173 (88%)
Frame = +1
Query: 1 KPYNFDALGQPPECGHLHPLLKVRSEFREIFLEMGFTEMPTNKYIESSFWNFDALFQPQQ 180
K YNFD+LG P GHLHPL+KVRSEFR+IF MGF+EM TN+Y+ESSFWNFDALFQPQQ
Sbjct: 264 KKYNFDSLGVVPSSGHLHPLMKVRSEFRQIFFSMGFSEMATNRYVESSFWNFDALFQPQQ 323
Query: 181 HPARDAHDTFFMSSPAATTEFPMEYLERVKKVHSKGGYGSQGYRYDWKIEEAQKNLLRTH 360
HPARDAHDTFF+S PA +T+FP +YLERVK VHSKGGYGS GY YDWKIEEAQKN+LRTH
Sbjct: 324 HPARDAHDTFFVSDPAISTKFPEDYLERVKTVHSKGGYGSAGYNYDWKIEEAQKNVLRTH 383
Query: 361 TTAVSARMLYRLAQQPEFTPQKYFSIDKVFRNETLDATHLAEFHQVEGVVADR 519
TTAVSAR LY+LAQ+ F P K FSID+VFRNETLDATHLAEFHQVEGV+A++
Sbjct: 384 TTAVSARQLYQLAQE-GFRPSKLFSIDRVFRNETLDATHLAEFHQVEGVIAEK 435
>AL132943-13|CAC14396.3| 458|Caenorhabditis elegans Hypothetical
protein Y60A3A.13 protein.
Length = 458
Score = 30.7 bits (66), Expect = 0.66
Identities = 11/38 (28%), Positives = 23/38 (60%)
Frame = +1
Query: 106 FTEMPTNKYIESSFWNFDALFQPQQHPARDAHDTFFMS 219
FT + + +++ NFD+L P+ H +R DT++++
Sbjct: 109 FTICESEPRVVTTYQNFDSLLTPEDHVSRRPSDTYYVN 146
Score = 30.7 bits (66), Expect = 0.66
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +1
Query: 427 YFSIDKVFRNETLDATHLAEFHQVEGV 507
+ I V+R + +D TH FHQ+EGV
Sbjct: 170 FLVIGDVYRRDEVDRTHYPCFHQIEGV 196
>AL117207-24|CAB60398.3| 458|Caenorhabditis elegans Hypothetical
protein Y60A3A.13 protein.
Length = 458
Score = 30.7 bits (66), Expect = 0.66
Identities = 11/38 (28%), Positives = 23/38 (60%)
Frame = +1
Query: 106 FTEMPTNKYIESSFWNFDALFQPQQHPARDAHDTFFMS 219
FT + + +++ NFD+L P+ H +R DT++++
Sbjct: 109 FTICESEPRVVTTYQNFDSLLTPEDHVSRRPSDTYYVN 146
Score = 30.7 bits (66), Expect = 0.66
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +1
Query: 427 YFSIDKVFRNETLDATHLAEFHQVEGV 507
+ I V+R + +D TH FHQ+EGV
Sbjct: 170 FLVIGDVYRRDEVDRTHYPCFHQIEGV 196
>AB096637-1|BAC76737.1| 458|Caenorhabditis elegans mitochondrial
phenylalanyl-tRNAsynthetase protein.
Length = 458
Score = 30.7 bits (66), Expect = 0.66
Identities = 11/38 (28%), Positives = 23/38 (60%)
Frame = +1
Query: 106 FTEMPTNKYIESSFWNFDALFQPQQHPARDAHDTFFMS 219
FT + + +++ NFD+L P+ H +R DT++++
Sbjct: 109 FTICESEPRVVTTYQNFDSLLTPEDHVSRRPSDTYYVN 146
Score = 30.7 bits (66), Expect = 0.66
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +1
Query: 427 YFSIDKVFRNETLDATHLAEFHQVEGV 507
+ I V+R + +D TH FHQ+EGV
Sbjct: 170 FLVIGDVYRRDEVDRTHYPCFHQIEGV 196
>AL132948-8|CAC51068.1| 230|Caenorhabditis elegans Hypothetical
protein Y39B6A.9 protein.
Length = 230
Score = 28.3 bits (60), Expect = 3.5
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +1
Query: 283 KGGYGSQGYRYDWKIEEAQKN 345
+GGY QG+ WK EAQKN
Sbjct: 195 QGGYAKQGHEEGWK-NEAQKN 214
>U41105-3|AAX88810.1| 514|Caenorhabditis elegans Lysyl (k) trna
synthetase protein1, isoform c protein.
Length = 514
Score = 27.5 bits (58), Expect = 6.2
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +1
Query: 424 KYFSIDKVFRNETLDATHLAEFHQVEGVVA 513
+ + + ++FRNE +D TH EF E +A
Sbjct: 235 RVYEVGRLFRNEGIDLTHNPEFTTCEFYMA 264
>U41105-2|AAK68395.1| 596|Caenorhabditis elegans Lysyl (k) trna
synthetase protein1, isoform b protein.
Length = 596
Score = 27.5 bits (58), Expect = 6.2
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +1
Query: 424 KYFSIDKVFRNETLDATHLAEFHQVEGVVA 513
+ + + ++FRNE +D TH EF E +A
Sbjct: 317 RVYEVGRLFRNEGIDLTHNPEFTTCEFYMA 346
>U41105-1|AAA82396.1| 572|Caenorhabditis elegans Lysyl (k) trna
synthetase protein1, isoform a protein.
Length = 572
Score = 27.5 bits (58), Expect = 6.2
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +1
Query: 424 KYFSIDKVFRNETLDATHLAEFHQVEGVVA 513
+ + + ++FRNE +D TH EF E +A
Sbjct: 293 RVYEVGRLFRNEGIDLTHNPEFTTCEFYMA 322
>Z92812-3|CAB07282.2| 342|Caenorhabditis elegans Hypothetical
protein T03E6.3 protein.
Length = 342
Score = 27.1 bits (57), Expect = 8.1
Identities = 15/55 (27%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Frame = -1
Query: 170 WNSASKFQNELSMYLFVGISVKPISKNISRNSDLTFKRGWR-*PHSGGWPKASKL 9
W +NE++ +F ++V +S ++S++ DLT+K ++ P +G K+ K+
Sbjct: 109 WKQFEVTRNEVNNGVFDELNVFELSCSVSKDIDLTWKMIYKLFPSTGKLKKSDKI 163
>U40423-2|AAA81451.1| 160|Caenorhabditis elegans Hypothetical
protein C24H10.3 protein.
Length = 160
Score = 27.1 bits (57), Expect = 8.1
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -2
Query: 142 NSQCIYLLASP*NPFPRISHGIP 74
N +C YLL SP FP +S P
Sbjct: 17 NDECTYLLLSPFYQFPALSTAFP 39
>U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical protein
F40H6.5 protein.
Length = 1288
Score = 27.1 bits (57), Expect = 8.1
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +1
Query: 304 GYRYDWKIEEAQKNLLRTHTTAVSARMLYRLAQQPEFTP 420
GY+ W I+ + N R+HTT V A + TP
Sbjct: 890 GYQ-QWNIDTVKMNCARSHTTTVEPSTPLETASTSQSTP 927
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,401,640
Number of Sequences: 27780
Number of extensions: 266917
Number of successful extensions: 809
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 807
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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