Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS335A05f
         (517 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72504-5|CAA96602.2|  812|Caenorhabditis elegans Hypothetical pr...    28   4.6  
Z92847-6|CAB07423.1| 1076|Caenorhabditis elegans Hypothetical pr...    27   8.0  
Z73911-9|CAA98143.1| 1076|Caenorhabditis elegans Hypothetical pr...    27   8.0  

>Z72504-5|CAA96602.2|  812|Caenorhabditis elegans Hypothetical
           protein C29E6.1a protein.
          Length = 812

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -2

Query: 162 STMPWSSVRS*TPRETARPLDTMVKSPVFLTST 64
           ST   ++  + TP+ + +P  T  KSPV +T+T
Sbjct: 388 STKKLTTTTTTTPKPSQKPTTTTTKSPVVITTT 420


>Z92847-6|CAB07423.1| 1076|Caenorhabditis elegans Hypothetical
           protein T12A7.5 protein.
          Length = 1076

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 17/55 (30%), Positives = 21/55 (38%)
 Frame = -1

Query: 496 QDHXRNYNLALKLGSTTXPSNERIAYGDGVDKHTELVSWKFITLWENNRVYFKIH 332
           QD     NL   LGS     +  I   +G    T  + W    LWEN   Y  +H
Sbjct: 284 QDTCFKTNLTQTLGSNQIQISSSILKVNG---STVPIDWSGFVLWENGDEYISMH 335


>Z73911-9|CAA98143.1| 1076|Caenorhabditis elegans Hypothetical
           protein T12A7.5 protein.
          Length = 1076

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 17/55 (30%), Positives = 21/55 (38%)
 Frame = -1

Query: 496 QDHXRNYNLALKLGSTTXPSNERIAYGDGVDKHTELVSWKFITLWENNRVYFKIH 332
           QD     NL   LGS     +  I   +G    T  + W    LWEN   Y  +H
Sbjct: 284 QDTCFKTNLTQTLGSNQIQISSSILKVNG---STVPIDWSGFVLWENGDEYISMH 335


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,395,767
Number of Sequences: 27780
Number of extensions: 191918
Number of successful extensions: 717
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 717
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)