Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS335A04f
         (305 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23E6.05 |arx1||ribosomal export complex Arx1 |Schizosaccharo...    26   1.1  
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo...    26   1.4  
SPBP22H7.06 |||nicotinamide riboside kinase |Schizosaccharomyces...    25   1.9  
SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces ...    24   4.4  
SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|...    24   4.4  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    24   5.8  
SPBC1685.11 |rlp1||RecA family ATPase Rlp1|Schizosaccharomyces p...    24   5.8  
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro...    24   5.8  
SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual      23   7.7  
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy...    23   7.7  
SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces ...    23   7.7  
SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|ch...    23   7.7  
SPCC613.02 |||membrane transporter|Schizosaccharomyces pombe|chr...    23   7.7  

>SPBC23E6.05 |arx1||ribosomal export complex Arx1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 417

 Score = 26.2 bits (55), Expect = 1.1
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
 Frame = -3

Query: 294 HTAAVAPPRGPSLGP-AHPG--ALISGALTSLTLPNLVGMN 181
           HT  V PP  P +GP   PG  A+ +    S  + NL+  N
Sbjct: 128 HTIVVTPPPQPGMGPYIGPGADAICAAHYASKAVANLLATN 168


>SPCC1739.11c |cdc11||SIN component scaffold protein
           Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1045

 Score = 25.8 bits (54), Expect = 1.4
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 132 QTKTFPLNISN*VQIQTPPHSVRDS 58
           Q  +FPL   N  Q + P HS+RD+
Sbjct: 501 QPHSFPLRKQNVAQSEFPKHSLRDN 525


>SPBP22H7.06 |||nicotinamide riboside kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 230

 Score = 25.4 bits (53), Expect = 1.9
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +1

Query: 121 GFCLYSFSDCMDKSRLRQSTVHSNEIGERQRSQRTGYESPRVSWSE 258
           GF +Y   D ++   +R   V   +  +R+R  RTGY +    W +
Sbjct: 124 GFMMYVNEDLINAFDIRLMLVTDFDTLKRRREARTGYITLEGFWQD 169


>SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 634

 Score = 24.2 bits (50), Expect = 4.4
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +1

Query: 46  FRIKTISYAVRWCLYLDSV 102
           F I +++ A RWC +LD++
Sbjct: 351 FYIPSLNPAPRWCSFLDNI 369


>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 24.2 bits (50), Expect = 4.4
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +1

Query: 136 SFSDCMDKSRLRQSTVHSNEIGERQRSQRTGYESPRVSWSERG 264
           SFS    KSR+  S+V S++       Q  G ++P +S    G
Sbjct: 614 SFSKSGRKSRMTVSSVRSSKATRVYDGQIVGEDAPEISKENPG 656


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +1

Query: 22   LDKRATFVFRIKTISYAVRWCLYLDSVGNVK 114
            L+    FVF + T+ Y    C YLD    +K
Sbjct: 2492 LENITGFVFTVPTMEYRNEVCSYLDLAMKLK 2522


>SPBC1685.11 |rlp1||RecA family ATPase Rlp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 363

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
 Frame = +2

Query: 44  YFVLRLSRTLCGGVCIWTQLE---MLSGKVFVCIVLVTVWIKADCASLPFIPTRLGSVKE 214
           Y+ LRL R   G   ++  L+     S K+F C V+ T W+  +   LP    R  S + 
Sbjct: 264 YWQLRLER---GYTQVYADLQNRLCTSSKLFGCPVVCTNWLLNNKQHLPIQCKRFRSERR 320

Query: 215 VSA 223
            +A
Sbjct: 321 ANA 323


>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting protein
            3 homolog Bud6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1385

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
 Frame = -1

Query: 167  SRLLSIQSLKLYKQKPFRLTFPTESKYRHHR--TAYEIVLIRNTNVARLSNYQNARI 3
            S +  +Q+    K KP  L   TES+ + +R     E++ ++  + ARL   + + +
Sbjct: 1125 SAIAELQAKSSIKSKPLTLKTATESEIKGYRDQIQLEVLNLKPDSEARLQAIERSEL 1181


>SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 614

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = +1

Query: 22  LDKRATFVFRIKTISYAVRWCLYLDSVGNVKRKGFCLYS 138
           L KR    F  +T++Y    C++       + +G CL++
Sbjct: 242 LQKREDLYFSSRTLAYVFGGCMHSLETIEGEEEGECLFN 280


>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +2

Query: 113 SGKVFVCIVLVTVWIKADCASLPFIPTR-LGSVKEVSAPDM 232
           SGK+ V   L+T+W K    +L F  TR +  + E+   D+
Sbjct: 624 SGKLKVIRALLTLWKKQGHRTLLFSQTRQMLDILEIGLKDL 664


>SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 496

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
 Frame = +1

Query: 85  LYLDSVGNVKRKGFCLYSFSDCMDKSRLRQSTVHSNEIGERQRSQRTGYESPRVS-WS 255
           + LD  GN+K   F   S      KSRL  S V S      + +Q+  Y+  +V  WS
Sbjct: 143 ILLDYNGNLKISDFGFASLFSYKGKSRLLNSPVGSPPYAAPEITQQ--YDGSKVDVWS 198


>SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 10/42 (23%), Positives = 22/42 (52%)
 Frame = +1

Query: 130 LYSFSDCMDKSRLRQSTVHSNEIGERQRSQRTGYESPRVSWS 255
           +Y+ +   ++ R  ++   SNE+ E  +   T +E+P   +S
Sbjct: 455 IYAVNVRENRRRDEKNEYLSNELSEEDKKDLTDFENPEFRYS 496


>SPCC613.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 497

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = -3

Query: 240 GALISGALTSLTLPNLVGMNGRLAQSAFIHT--VTKTIQTKT 121
           GA+  GA+  +T    + +N  +A   FI    +  +I+TKT
Sbjct: 455 GAICGGAIFDITTVGFIALNLGIAVLVFIQLLFLWNSIKTKT 496


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,360,230
Number of Sequences: 5004
Number of extensions: 25908
Number of successful extensions: 92
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 77794588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)