Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS335A04f
(305 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1082 - 27461095-27461727,27463596-27464603 31 0.24
01_06_0658 - 30942890-30943054,30943159-30943266,30943448-309435... 29 0.55
09_06_0147 + 21195222-21195377,21195471-21195522,21196842-212043... 29 0.72
06_03_1384 + 29786028-29786657,29788581-29788711,29788987-297890... 28 1.3
09_06_0067 - 20645012-20645095,20645365-20645466,20645583-206458... 28 1.7
07_01_1120 - 10338265-10338624,10338739-10338873,10339411-10340451 28 1.7
01_05_0503 - 22779025-22779397,22779602-22779627 28 1.7
06_03_0948 - 26252230-26252460,26252567-26252614,26252703-262530... 27 2.2
12_02_0710 - 22371771-22372052,22372368-22372580 27 2.9
06_01_1099 - 9030165-9030605 27 2.9
03_05_0819 + 27948797-27948956,27948976-27949202 27 2.9
08_01_0229 + 1834102-1834358,1834442-1834901 27 3.8
04_04_0965 - 29762388-29762564,29764272-29766361,29766567-297671... 27 3.8
11_06_0701 + 26407055-26407597,26407794-26409644 26 5.1
11_06_0207 + 21214631-21216121 26 6.7
09_04_0115 - 14789499-14790288,14792055-14792441,14792820-14793193 26 6.7
09_01_0050 + 853712-855368,855440-856113 26 6.7
08_01_0300 + 2427524-2427827,2429066-2429274,2429512-2430150 26 6.7
05_02_0054 - 6175324-6175905 26 6.7
02_05_1055 - 33798162-33798290,33798417-33798604,33798707-337987... 26 6.7
11_06_0596 + 25385744-25388890 25 8.9
07_03_1687 - 28673491-28674822 25 8.9
07_01_0249 - 1844894-1845363,1845557-1848158 25 8.9
06_03_1366 + 29601921-29602646 25 8.9
04_03_1022 - 21778315-21779007 25 8.9
03_02_0137 + 5832608-5833590,5833680-5833731,5833827-5833904,583... 25 8.9
>06_03_1082 - 27461095-27461727,27463596-27464603
Length = 546
Score = 30.7 bits (66), Expect = 0.24
Identities = 18/48 (37%), Positives = 25/48 (52%)
Frame = -3
Query: 288 AAVAPPRGPSLGPAHPGALISGALTSLTLPNLVGMNGRLAQSAFIHTV 145
AA A P G P + I+GALT LTL ++G G + F+ T+
Sbjct: 185 AAAAAPGGDQPPPVNVSWQIAGALTDLTLRAIMGECGFRWREEFLETL 232
>01_06_0658 -
30942890-30943054,30943159-30943266,30943448-30943598,
30943683-30943780,30943869-30944020,30944298-30944403,
30944499-30944588,30944668-30944813,30945396-30945695,
30945953-30946038,30947260-30947996
Length = 712
Score = 29.5 bits (63), Expect = 0.55
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = -3
Query: 285 AVAPPRGPSLGPAHPGALIS 226
AV PP GP+L P PGA+++
Sbjct: 140 AVPPPGGPALRPPRPGAVVA 159
>09_06_0147 + 21195222-21195377,21195471-21195522,21196842-21204362,
21204453-21205031,21205176-21205484,21205638-21205718,
21205971-21206279,21207430-21207816,21207964-21208767,
21208856-21209218,21209437-21209667,21209934-21210278,
21210494-21210712,21210759-21210815,21210978-21211322,
21211538-21211756,21211803-21211859,21212022-21212366,
21212584-21212814,21213100-21213458
Length = 4322
Score = 29.1 bits (62), Expect = 0.72
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -3
Query: 303 TAXHTAAVAPPRGPSLGPAHPGALISGALTSLTLPNLVG 187
T+ A+ P +G P HP AL S + +T +LVG
Sbjct: 2493 TSRDEPAILPGQGAPQEPTHPDALDSASTRDVTADSLVG 2531
>06_03_1384 +
29786028-29786657,29788581-29788711,29788987-29789028,
29789383-29789441,29789774-29790070,29790180-29790289,
29790966-29791070,29791201-29791263,29791766-29791933,
29792111-29792248
Length = 580
Score = 28.3 bits (60), Expect = 1.3
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +2
Query: 188 PTRLGSVKEVSAPDMRAPG*AGPSEGPRGGAT 283
P R GS + P + PG A PS P GGA+
Sbjct: 52 PRRRGSKSGSTTPGHQTPGVAWPSPYPSGGAS 83
>09_06_0067 -
20645012-20645095,20645365-20645466,20645583-20645828,
20646042-20646236,20646343-20646636,20646952-20647134,
20647534-20647593,20647796-20648002,20648081-20648282,
20648367-20648494,20648759-20648842,20648955-20649134,
20649281-20649372,20649620-20649789,20650226-20650337,
20650451-20650554,20651262-20651371
Length = 850
Score = 27.9 bits (59), Expect = 1.7
Identities = 15/48 (31%), Positives = 21/48 (43%)
Frame = +2
Query: 140 LVTVWIKADCASLPFIPTRLGSVKEVSAPDMRAPG*AGPSEGPRGGAT 283
L W++A A L PT ++ E + P A P +GP G T
Sbjct: 703 LALTWVRARAADLNLSPTSDINLLESRDIHIHFPAGAVPKDGPSAGVT 750
>07_01_1120 - 10338265-10338624,10338739-10338873,10339411-10340451
Length = 511
Score = 27.9 bits (59), Expect = 1.7
Identities = 18/42 (42%), Positives = 22/42 (52%)
Frame = +3
Query: 162 PTAPVYRSFQRDWGASKKSAHRI*EPPGELVRARVREGVPPP 287
P P+ R R+ SK++A PP E RAR R VPPP
Sbjct: 9 PPPPLTRKRGREARKSKEAA-----PPREPRRARSRSHVPPP 45
>01_05_0503 - 22779025-22779397,22779602-22779627
Length = 132
Score = 27.9 bits (59), Expect = 1.7
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -1
Query: 137 LYKQKPFRLTFPTESKYRHHRTAYEIVLIRNTNVARLSN 21
LYK + ++L + E+K+R+ TA IR + LSN
Sbjct: 42 LYKSQEYKLHYTLETKHRNRNTANSKDGIRMAAMENLSN 80
>06_03_0948 -
26252230-26252460,26252567-26252614,26252703-26253041,
26253132-26253260,26255404-26255967
Length = 436
Score = 27.5 bits (58), Expect = 2.2
Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Frame = -3
Query: 282 VAPPRGPSLGPAHPGALISGAL--TSLTLPNLVGMNGRLAQSAFIHTVTKTIQT 127
VA PSL A PGAL G L +PNL G + T ++QT
Sbjct: 29 VASVSSPSLPSAPPGALAGGRRFPGGLDVPNLKKRGGGTRSWIRVEAATASVQT 82
>12_02_0710 - 22371771-22372052,22372368-22372580
Length = 164
Score = 27.1 bits (57), Expect = 2.9
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -1
Query: 305 APPCTQRRWHPLADPRSDQLT 243
APP Q R H L P++DQ+T
Sbjct: 85 APPTDQTRVHGLKGPQADQIT 105
>06_01_1099 - 9030165-9030605
Length = 146
Score = 27.1 bits (57), Expect = 2.9
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Frame = +1
Query: 88 YLDSVGNVKRKGFCLYSFSDCMDKSRLRQSTVHSNEIGERQ---RSQRTGYESPRVSWSE 258
Y+D VG + G C+ + + + R +H +E+ G ES VS E
Sbjct: 22 YVDHVGVIGGDGACVTNLQQQVSRVRPSGEVMHQHEVMRLPGGGHPDGAGVESESVSELE 81
Query: 259 RGSA 270
RG A
Sbjct: 82 RGGA 85
>03_05_0819 + 27948797-27948956,27948976-27949202
Length = 128
Score = 27.1 bits (57), Expect = 2.9
Identities = 14/23 (60%), Positives = 17/23 (73%), Gaps = 2/23 (8%)
Frame = -2
Query: 295 AHSGGGTPSRT--LARTSSPGGS 233
A GGG+PSRT LART++P S
Sbjct: 18 AAGGGGSPSRTPRLARTAAPFAS 40
>08_01_0229 + 1834102-1834358,1834442-1834901
Length = 238
Score = 26.6 bits (56), Expect = 3.8
Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Frame = +1
Query: 154 DKSRLRQSTVHSNEIGERQRSQRTGYE--SPRVSWSERGSARGCHRRCVXG 300
D+ ST E GE + + YE + SE +RG HR C+ G
Sbjct: 37 DEEAWLSSTECEAESGEDEHGKGVAYEIGAAASGGSETAGSRGSHRGCLRG 87
>04_04_0965 -
29762388-29762564,29764272-29766361,29766567-29767170,
29768395-29768637,29768704-29770203
Length = 1537
Score = 26.6 bits (56), Expect = 3.8
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = -2
Query: 289 SGGGTPSRTLARTSSPGGSHIRCADFFDAPQ 197
SGGG SRTL T+ GG +R F P+
Sbjct: 135 SGGG--SRTLVSTTGAGGGGVRRGKVFGEPR 163
>11_06_0701 + 26407055-26407597,26407794-26409644
Length = 797
Score = 26.2 bits (55), Expect = 5.1
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -3
Query: 111 NISN*VQIQTPPHSVRDSLNTKYERCSF 28
N+ N ++ TPPH++RD + + C F
Sbjct: 603 NVENIFEMLTPPHNLRDLVIGYFFGCRF 630
>11_06_0207 + 21214631-21216121
Length = 496
Score = 25.8 bits (54), Expect = 6.7
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -1
Query: 173 WRSRLLSIQSLKLYKQKPFRLTFPTESKYRHHRTAYEIV 57
WRS S++ + YKQ+ L + TES Y +V
Sbjct: 86 WRSAYTSLRDMGQYKQQTPCLLYTTESSGEKVSCLYSLV 124
>09_04_0115 - 14789499-14790288,14792055-14792441,14792820-14793193
Length = 516
Score = 25.8 bits (54), Expect = 6.7
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -3
Query: 303 TAXHTAAVAPPRGPSLGPAHPGALISGALTSLTL 202
T + A APP GP+ PA AL + A + +L
Sbjct: 50 TLGASPAAAPPTGPASSPAASPALQTSAAAAASL 83
>09_01_0050 + 853712-855368,855440-856113
Length = 776
Score = 25.8 bits (54), Expect = 6.7
Identities = 14/34 (41%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Frame = +2
Query: 194 RLGSVKEV-SAPDMRAPG*AGPSEGPRGGATAAV 292
R GS + S PD+ P A P GP G AV
Sbjct: 631 RFGSKRSAKSLPDLSPPPGASPLAGPSGSGDTAV 664
>08_01_0300 + 2427524-2427827,2429066-2429274,2429512-2430150
Length = 383
Score = 25.8 bits (54), Expect = 6.7
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = -3
Query: 291 TAAVAPPRGPSLGPAHPGALISGALTSLTLP 199
++++ PP P++ P PG +++ A S TLP
Sbjct: 211 SSSLVPPPVPAMAPVAPGPVLTSA--SATLP 239
>05_02_0054 - 6175324-6175905
Length = 193
Score = 25.8 bits (54), Expect = 6.7
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -1
Query: 290 QRRWHPLADPRSDQLTRGL 234
+R W LADPR+ + RGL
Sbjct: 43 RRPWRELADPRAASVPRGL 61
>02_05_1055 -
33798162-33798290,33798417-33798604,33798707-33798767,
33799045-33799122,33799250-33799472,33799599-33799824,
33799922-33800116,33800210-33800627,33800904-33801182
Length = 598
Score = 25.8 bits (54), Expect = 6.7
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -3
Query: 294 HTAAVAPPRGPSLGPAHPGAL 232
HTAA A GP+LG P A+
Sbjct: 69 HTAAAAAAAGPALGLTKPNAV 89
>11_06_0596 + 25385744-25388890
Length = 1048
Score = 25.4 bits (53), Expect = 8.9
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +1
Query: 160 SRLRQSTVHSNEIGERQRSQRTGYESP 240
+R+RQ V + E+GERQ QR G P
Sbjct: 115 TRIRQLKVRAREVGERQ--QRYGVAVP 139
>07_03_1687 - 28673491-28674822
Length = 443
Score = 25.4 bits (53), Expect = 8.9
Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = +1
Query: 85 LYLDSVGNVKRKGFCLYSFSDCMDKSRLRQSTVHSNEIGERQRSQRTGYESPRVS-WS 255
L LD N+K F L + +DC + L +T + + R GY+ + WS
Sbjct: 141 LLLDENSNLKVSDFGLSALADCKRQDGLLHTTCGTPAYVAPEVINRRGYDGAKADIWS 198
>07_01_0249 - 1844894-1845363,1845557-1848158
Length = 1023
Score = 25.4 bits (53), Expect = 8.9
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = -3
Query: 267 GPSLGPAHPGA 235
GP LGP HPGA
Sbjct: 614 GPYLGPCHPGA 624
>06_03_1366 + 29601921-29602646
Length = 241
Score = 25.4 bits (53), Expect = 8.9
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +1
Query: 193 EIGERQRSQRTGYESPRVSWSERGSARGCHRRCV 294
E+GER R + G E RV + S G H R V
Sbjct: 137 ELGERVRVRILGGEEARVEERDSASYPGLHARYV 170
>04_03_1022 - 21778315-21779007
Length = 230
Score = 25.4 bits (53), Expect = 8.9
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = -3
Query: 294 HTAAVAPPRGPSLGPAHP 241
HT A AP GP + P HP
Sbjct: 73 HTPAPAPAPGPYIPPHHP 90
>03_02_0137 +
5832608-5833590,5833680-5833731,5833827-5833904,
5835228-5835347,5835618-5835716,5835821-5835975,
5836117-5836257,5836395-5836503
Length = 578
Score = 25.4 bits (53), Expect = 8.9
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +1
Query: 232 ESPRVSWSERGSARGCHRR 288
+S R+SW R SA GC R
Sbjct: 325 KSDRLSWDSRTSAGGCRSR 343
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,672,047
Number of Sequences: 37544
Number of extensions: 196555
Number of successful extensions: 728
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 728
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 363831720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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