Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS335A04f
(305 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF104858-1|AAC79090.1| 390|Caenorhabditis elegans putative RNA-... 32 0.069
AF063007-5|AAD47125.1| 712|Caenorhabditis elegans Prion-like-(q... 32 0.069
AF068708-11|AAC17757.1| 136|Caenorhabditis elegans Hypothetical... 31 0.21
AC084161-1|ABD63205.1| 1375|Caenorhabditis elegans Hypothetical ... 30 0.37
Z81031-4|CAF31468.2| 421|Caenorhabditis elegans Hypothetical pr... 27 2.6
Z81031-3|CAF31467.1| 455|Caenorhabditis elegans Hypothetical pr... 27 2.6
Z81031-2|CAF31464.1| 429|Caenorhabditis elegans Hypothetical pr... 27 2.6
Z81031-1|CAB02718.4| 432|Caenorhabditis elegans Hypothetical pr... 27 2.6
L07144-7|AAK21444.2| 646|Caenorhabditis elegans Hypothetical pr... 27 2.6
AF539814-1|AAN16459.1| 421|Caenorhabditis elegans tyramine rece... 27 2.6
AF539813-1|AAN16458.1| 444|Caenorhabditis elegans tyramine rece... 27 2.6
AC024877-3|AAF60898.1| 760|Caenorhabditis elegans Phosphodieste... 27 2.6
>AF104858-1|AAC79090.1| 390|Caenorhabditis elegans putative
RNA-binding protein PRP-1 protein.
Length = 390
Score = 32.3 bits (70), Expect = 0.069
Identities = 18/46 (39%), Positives = 22/46 (47%)
Frame = +1
Query: 157 KSRLRQSTVHSNEIGERQRSQRTGYESPRVSWSERGSARGCHRRCV 294
+SR N+ G RS R G+E P V RG ARG + R V
Sbjct: 126 ESRDNNRDNRDNKEGAAPRSTRGGFEKPYVGRGGRGGARGGYSRAV 171
>AF063007-5|AAD47125.1| 712|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 59
protein.
Length = 712
Score = 32.3 bits (70), Expect = 0.069
Identities = 18/46 (39%), Positives = 22/46 (47%)
Frame = +1
Query: 157 KSRLRQSTVHSNEIGERQRSQRTGYESPRVSWSERGSARGCHRRCV 294
+SR N+ G RS R G+E P V RG ARG + R V
Sbjct: 126 ESRDNNRDNRDNKEGAAPRSTRGGFEKPYVGRGGRGGARGGYSRAV 171
>AF068708-11|AAC17757.1| 136|Caenorhabditis elegans Hypothetical
protein C18G1.1 protein.
Length = 136
Score = 30.7 bits (66), Expect = 0.21
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = -1
Query: 158 LSIQSLKLYKQKPFRLTFPTESKYRHHRTAYEIVL 54
+S+ LK Y +KP R TE++ +H+RT + I+L
Sbjct: 45 ISLFPLKDYSRKPGRGPQRTEAEMKHYRTVFYIIL 79
>AC084161-1|ABD63205.1| 1375|Caenorhabditis elegans Hypothetical
protein Y92H12A.5 protein.
Length = 1375
Score = 29.9 bits (64), Expect = 0.37
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +1
Query: 157 KSRLRQSTVHSNEIGERQRSQRTGYESPRVSWSERGSA 270
K+ ++ ST+H+ + +R+ R E+ R WSER +A
Sbjct: 841 KTIVQSSTLHNKAVFCFERALRVAIEACRADWSERNAA 878
>Z81031-4|CAF31468.2| 421|Caenorhabditis elegans Hypothetical
protein C02D4.2f protein.
Length = 421
Score = 27.1 bits (57), Expect = 2.6
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +2
Query: 125 FVCIVLVTVWIKADCASLP 181
FVCIV+V VWI + S+P
Sbjct: 163 FVCIVIVIVWILSMLISVP 181
>Z81031-3|CAF31467.1| 455|Caenorhabditis elegans Hypothetical
protein C02D4.2e protein.
Length = 455
Score = 27.1 bits (57), Expect = 2.6
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +2
Query: 125 FVCIVLVTVWIKADCASLP 181
FVCIV+V VWI + S+P
Sbjct: 174 FVCIVIVIVWILSMLISVP 192
>Z81031-2|CAF31464.1| 429|Caenorhabditis elegans Hypothetical
protein C02D4.2b protein.
Length = 429
Score = 27.1 bits (57), Expect = 2.6
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +2
Query: 125 FVCIVLVTVWIKADCASLP 181
FVCIV+V VWI + S+P
Sbjct: 171 FVCIVIVIVWILSMLISVP 189
>Z81031-1|CAB02718.4| 432|Caenorhabditis elegans Hypothetical
protein C02D4.2a protein.
Length = 432
Score = 27.1 bits (57), Expect = 2.6
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +2
Query: 125 FVCIVLVTVWIKADCASLP 181
FVCIV+V VWI + S+P
Sbjct: 174 FVCIVIVIVWILSMLISVP 192
>L07144-7|AAK21444.2| 646|Caenorhabditis elegans Hypothetical
protein R05D3.9 protein.
Length = 646
Score = 27.1 bits (57), Expect = 2.6
Identities = 28/94 (29%), Positives = 40/94 (42%), Gaps = 6/94 (6%)
Frame = -3
Query: 294 HTAAVAPPRGPSLGPAHPGALISG----ALTSLTLPNLVGMNGRLAQSAFIHTVTKTIQT 127
H V PP GP GP+ PG G P +V QS +I+ + +Q
Sbjct: 33 HMMGVKPP-GPPSGPSPPGKFPDGDEGWDYDETAAPGIV-PEPHFIQSTYIYR-SPNVQE 89
Query: 126 KTFPLNISN*VQ-IQTP-PHSVRDSLNTKYERCS 31
KTF + N ++ I+T S R +L + CS
Sbjct: 90 KTFSSRVVNVLKDIRTRLAKSARLTLENENIECS 123
>AF539814-1|AAN16459.1| 421|Caenorhabditis elegans tyramine
receptor short isoformSER-2a protein.
Length = 421
Score = 27.1 bits (57), Expect = 2.6
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +2
Query: 125 FVCIVLVTVWIKADCASLP 181
FVCIV+V VWI + S+P
Sbjct: 163 FVCIVIVIVWILSMLISVP 181
>AF539813-1|AAN16458.1| 444|Caenorhabditis elegans tyramine
receptor long isoformSER-2 protein.
Length = 444
Score = 27.1 bits (57), Expect = 2.6
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +2
Query: 125 FVCIVLVTVWIKADCASLP 181
FVCIV+V VWI + S+P
Sbjct: 163 FVCIVIVIVWILSMLISVP 181
>AC024877-3|AAF60898.1| 760|Caenorhabditis elegans
Phosphodiesterase protein 6, isoforma protein.
Length = 760
Score = 27.1 bits (57), Expect = 2.6
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +3
Query: 192 RDWGASKKSAHRI*EPPGELVRARVREGVP 281
R+WG ++ AHRI E E R +G+P
Sbjct: 662 REWGLCQRWAHRIVEEYFEQTREEKEKGLP 691
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,735,578
Number of Sequences: 27780
Number of extensions: 155514
Number of successful extensions: 508
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 508
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 323034540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -