Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS334H12f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1709.06 |dus2||tRNA dihydrouridine synthase Dus2 |Schizosacc... 31 0.14
SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces po... 27 2.2
SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual 26 3.9
SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein Phf1... 26 3.9
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo... 26 3.9
SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa... 25 5.2
SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy... 25 6.8
SPCC18.17c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 25 6.8
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual 25 9.0
SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3 s... 25 9.0
SPBC1215.01 |shy1||SURF-family protein Shy1|Schizosaccharomyces ... 25 9.0
>SPBC1709.06 |dus2||tRNA dihydrouridine synthase Dus2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 479
Score = 30.7 bits (66), Expect = 0.14
Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = -3
Query: 228 MSISC-LRLL-TRRNVNSFVESISRTTFLAFSVSCPISPAYNTEVA 97
+SISC +RLL T+ + VE I T A +V C +P NTE A
Sbjct: 154 ISISCKIRLLETKEDTLKLVERICDTGVRAITVHCRTTPMRNTEPA 199
>SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 361
Score = 26.6 bits (56), Expect = 2.2
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = -3
Query: 210 RLLTRRNVNSFVESISRTTFLAFSVSCPISPAYNTEVALSNELLI 76
RL+T ++ F+ ++ +TF F ++CP Y AL N+ +I
Sbjct: 47 RLITVEKIDVFINAMVPSTFALFCMACPYL-LYTAVDALLNKDVI 90
>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
Length = 653
Score = 25.8 bits (54), Expect = 3.9
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Frame = -3
Query: 258 TINMNSLSGAMSISCL----RLLTRRNVNSFVESISRTTFLAFSVSCPISPAYNTE 103
T+ +N S MS+ + R L RR ++ + +S+TT ++ V CP+ PA E
Sbjct: 569 TLYLNCNSKPMSLGSMFEHYRKLARRLISHY---LSKTTLISLLVGCPV-PAIPAE 620
>SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein
Phf1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 461
Score = 25.8 bits (54), Expect = 3.9
Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +1
Query: 337 FSEHYLLYTGTILEPPMVIFLALRNKFSVV--DFFHW 441
++ Y+ +GT+ + P +I LA+RN S + F+W
Sbjct: 344 YTASYVANSGTLYDYPTLIRLAIRNTLSPSKDEIFNW 380
>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1826
Score = 25.8 bits (54), Expect = 3.9
Identities = 14/59 (23%), Positives = 31/59 (52%)
Frame = +1
Query: 259 YTEHIGLNLYLQKTVG*FIIKIILYCFSEHYLLYTGTILEPPMVIFLALRNKFSVVDFF 435
Y+ + G ++YL + ++ + ++ HY+ + T+ + F+ ++FS VDFF
Sbjct: 1412 YSLYTGSSIYLGSRLIMMLLFGTMTVWTTHYVYFWVTMFALVICPFIYNPHQFSFVDFF 1470
>SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 707
Score = 25.4 bits (53), Expect = 5.2
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +1
Query: 313 IIKIILYCFSEHYLLYTGTILEPPMVIFLALRNK 414
+I +L SE+Y+LY I P +VI +R+K
Sbjct: 554 LIDQLLELLSEYYVLYATDISFPELVIPAIVRSK 587
>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 922
Score = 25.0 bits (52), Expect = 6.8
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +2
Query: 11 IKRIQAHKGVMGVVIVNHEG 70
I+RIQAH G + + V H+G
Sbjct: 470 IERIQAHDGAIWDLAVGHDG 489
>SPCC18.17c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 488
Score = 25.0 bits (52), Expect = 6.8
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 196 SSQKSKT*DTHCTGQRIHINCYTEHIGL 279
SS+K+K DT + + YT+HIGL
Sbjct: 245 SSEKTKYLDTIAQDYKGSADSYTDHIGL 272
>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1202
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +1
Query: 226 HCTGQRIHINCYTEHIGLNLYLQKTV 303
+C+ I+I C++E+ L LQKT+
Sbjct: 460 NCSAGDIYILCFSENCWLYSVLQKTI 485
>SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3
subunit Alp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 821
Score = 24.6 bits (51), Expect = 9.0
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = -3
Query: 195 RNVNSFVESISRTTFLAFSVSCPISPAYNTEVALSNELLIGIP-SWFTMTTPITPL 31
RN +SF+ + + + I YN +LSN + I +P S + TP+
Sbjct: 709 RNEDSFLHQLHDILKVILNFHDAIELLYNFSCSLSNRIRINVPISTDALAAQYTPI 764
>SPBC1215.01 |shy1||SURF-family protein Shy1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 290
Score = 24.6 bits (51), Expect = 9.0
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 107 VLYAGLIGQLTEKARNVVREMDSTNELTFLRVR 205
V+ GL+ Q T+K R +++ N FL VR
Sbjct: 165 VVIEGLLRQHTDKPRFMMKNEPEKNSFYFLNVR 197
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,230,497
Number of Sequences: 5004
Number of extensions: 47106
Number of successful extensions: 98
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -