Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS334H12f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z54216-5|CAA90946.1| 95|Caenorhabditis elegans Hypothetical pr... 95 4e-20
DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-t... 29 2.0
AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-t... 29 2.0
AF045640-7|AAU05589.1| 978|Caenorhabditis elegans Novel channel... 29 2.0
AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel... 29 2.0
AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel... 29 2.0
AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel... 29 2.0
AC006627-7|AAK85463.1| 218|Caenorhabditis elegans Hypothetical ... 28 4.7
AL022716-4|CAA18773.1| 703|Caenorhabditis elegans Hypothetical ... 27 6.2
Z72514-3|CAA96673.1| 741|Caenorhabditis elegans Hypothetical pr... 27 8.1
>Z54216-5|CAA90946.1| 95|Caenorhabditis elegans Hypothetical
protein T24H10.6 protein.
Length = 95
Score = 94.7 bits (225), Expect = 4e-20
Identities = 39/91 (42%), Positives = 71/91 (78%)
Frame = +2
Query: 2 EETIKRIQAHKGVMGVVIVNHEGIPIKSSLDNATSVLYAGLIGQLTEKARNVVREMDSTN 181
EETI+R+Q+ KGV+G+++V+ G I S++D+ + + + QL EK + +RE+DS+N
Sbjct: 5 EETIRRLQSEKGVVGIIVVDSAGRVIHSTIDSDATQSHTAFLQQLCEKTKTSIRELDSSN 64
Query: 182 ELTFLRVRSRRHEILIAPDREFILIVIQNTS 274
+LTFLR+R++++EI+IAPD++ +++VI++ S
Sbjct: 65 DLTFLRLRTKKNEIMIAPDKDHVIMVIKDLS 95
>DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1797
Score = 29.1 bits (62), Expect = 2.0
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = +3
Query: 270 HRIKSLLTKNSRLIYN*NYFILFFRTLFIIY 362
+RI+ LL ++S+ + N F +FF TL+ I+
Sbjct: 183 NRIEQLLKRSSQQVKNVTLFFVFFMTLYAIF 213
>AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1831
Score = 29.1 bits (62), Expect = 2.0
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = +3
Query: 270 HRIKSLLTKNSRLIYN*NYFILFFRTLFIIY 362
+RI+ LL ++S+ + N F +FF TL+ I+
Sbjct: 183 NRIEQLLKRSSQQVKNVTLFFVFFMTLYAIF 213
>AF045640-7|AAU05589.1| 978|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
b protein.
Length = 978
Score = 29.1 bits (62), Expect = 2.0
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = +3
Query: 270 HRIKSLLTKNSRLIYN*NYFILFFRTLFIIY 362
+RI+ LL ++S+ + N F +FF TL+ I+
Sbjct: 241 NRIEQLLKRSSQQVKNVTLFFVFFMTLYAIF 271
>AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
a protein.
Length = 1562
Score = 29.1 bits (62), Expect = 2.0
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = +3
Query: 270 HRIKSLLTKNSRLIYN*NYFILFFRTLFIIY 362
+RI+ LL ++S+ + N F +FF TL+ I+
Sbjct: 241 NRIEQLLKRSSQQVKNVTLFFVFFMTLYAIF 271
>AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
c protein.
Length = 1913
Score = 29.1 bits (62), Expect = 2.0
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = +3
Query: 270 HRIKSLLTKNSRLIYN*NYFILFFRTLFIIY 362
+RI+ LL ++S+ + N F +FF TL+ I+
Sbjct: 241 NRIEQLLKRSSQQVKNVTLFFVFFMTLYAIF 271
>AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
d protein.
Length = 1861
Score = 29.1 bits (62), Expect = 2.0
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = +3
Query: 270 HRIKSLLTKNSRLIYN*NYFILFFRTLFIIY 362
+RI+ LL ++S+ + N F +FF TL+ I+
Sbjct: 213 NRIEQLLKRSSQQVKNVTLFFVFFMTLYAIF 243
>AC006627-7|AAK85463.1| 218|Caenorhabditis elegans Hypothetical
protein E01A2.6 protein.
Length = 218
Score = 27.9 bits (59), Expect = 4.7
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +1
Query: 1 RRNDQEDPSPQRGDGCRHRKPRRY 72
R ND +D QRGDGC + Y
Sbjct: 100 RSNDFDDDGDQRGDGCSSNYSKAY 123
>AL022716-4|CAA18773.1| 703|Caenorhabditis elegans Hypothetical
protein C24F3.4 protein.
Length = 703
Score = 27.5 bits (58), Expect = 6.2
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +3
Query: 117 LGLLDSLLRRPGMWFVKWT 173
+GL D + R WFVKWT
Sbjct: 119 MGLADDNVYRESRWFVKWT 137
>Z72514-3|CAA96673.1| 741|Caenorhabditis elegans Hypothetical
protein T10B10.3 protein.
Length = 741
Score = 27.1 bits (57), Expect = 8.1
Identities = 18/51 (35%), Positives = 23/51 (45%)
Frame = +3
Query: 192 SFESEVEDMRYSLHRTENSY*LLYRTHRIKSLLTKNSRLIYN*NYFILFFR 344
SF S+ +RY + N Y YRTH S K + L +FI FR
Sbjct: 342 SFHSDNMKLRYLVMTNYNVYVFKYRTHTQNSSPGKTTNLSSE-GFFIPLFR 391
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,046,173
Number of Sequences: 27780
Number of extensions: 253805
Number of successful extensions: 553
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 553
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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