Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS334H10f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF548287-1|AAN40683.1| 2238|Caenorhabditis elegans poly ADP-ribo...    31   0.38 
AF047664-2|AAC04454.2| 2276|Caenorhabditis elegans Poly(adp-ribo...    31   0.38 
AF047664-1|AAO12392.1| 2238|Caenorhabditis elegans Poly(adp-ribo...    31   0.38 
U13875-11|AAA21158.1| 1193|Caenorhabditis elegans Rna polymerase...    27   6.2  
U10333-1|AAA50224.1|  859|Caenorhabditis elegans RNA polymerase ...    27   6.2  
U23523-7|AAC46562.2|   85|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z93390-6|CAB07675.4|  816|Caenorhabditis elegans Hypothetical pr...    23   8.7  
Z80214-7|CAC42261.2|  816|Caenorhabditis elegans Hypothetical pr...    23   8.7  
Z93390-1|CAE46674.1|  540|Caenorhabditis elegans Hypothetical pr...    23   9.0  

>AF548287-1|AAN40683.1| 2238|Caenorhabditis elegans poly ADP-ribose
            metabolism enzyme-5 protein.
          Length = 2238

 Score = 31.5 bits (68), Expect = 0.38
 Identities = 20/70 (28%), Positives = 31/70 (44%)
 Frame = +3

Query: 297  AAAPVHYASPVHYAAPVAKVITPAHKVLVSAHHEEEYAHPKYDFAYSVADGHSGDNKSQH 476
            A  P   A P+ + A     I  A    V A  E +        + S  DG + +NKS+H
Sbjct: 1504 ATGPRCVAVPMRFGATSRAFIPAAAFASVPARVESDEEEEDNSGSESGEDGAASENKSEH 1563

Query: 477  ESRDGDAVHG 506
             S +G++ +G
Sbjct: 1564 GSENGESGNG 1573


>AF047664-2|AAC04454.2| 2276|Caenorhabditis elegans Poly(adp-ribose)
            metabolism enzymeprotein 5, isoform a protein.
          Length = 2276

 Score = 31.5 bits (68), Expect = 0.38
 Identities = 20/70 (28%), Positives = 31/70 (44%)
 Frame = +3

Query: 297  AAAPVHYASPVHYAAPVAKVITPAHKVLVSAHHEEEYAHPKYDFAYSVADGHSGDNKSQH 476
            A  P   A P+ + A     I  A    V A  E +        + S  DG + +NKS+H
Sbjct: 1542 ATGPRCVAVPMRFGATSRAFIPAAAFASVPARVESDEEEEDNSGSESGEDGAASENKSEH 1601

Query: 477  ESRDGDAVHG 506
             S +G++ +G
Sbjct: 1602 GSENGESGNG 1611


>AF047664-1|AAO12392.1| 2238|Caenorhabditis elegans Poly(adp-ribose)
            metabolism enzymeprotein 5, isoform b protein.
          Length = 2238

 Score = 31.5 bits (68), Expect = 0.38
 Identities = 20/70 (28%), Positives = 31/70 (44%)
 Frame = +3

Query: 297  AAAPVHYASPVHYAAPVAKVITPAHKVLVSAHHEEEYAHPKYDFAYSVADGHSGDNKSQH 476
            A  P   A P+ + A     I  A    V A  E +        + S  DG + +NKS+H
Sbjct: 1504 ATGPRCVAVPMRFGATSRAFIPAAAFASVPARVESDEEEEDNSGSESGEDGAASENKSEH 1563

Query: 477  ESRDGDAVHG 506
             S +G++ +G
Sbjct: 1564 GSENGESGNG 1573


>U13875-11|AAA21158.1| 1193|Caenorhabditis elegans Rna polymerase ii
           (b) subunit protein2 protein.
          Length = 1193

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +3

Query: 432 YSVADGHSGDNKSQHESRDG 491
           YS+A G+ GD K  H+SR G
Sbjct: 452 YSLATGNWGDQKKAHQSRAG 471


>U10333-1|AAA50224.1|  859|Caenorhabditis elegans RNA polymerase II,
           second largestsubunit protein.
          Length = 859

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +3

Query: 432 YSVADGHSGDNKSQHESRDG 491
           YS+A G+ GD K  H+SR G
Sbjct: 253 YSLATGNWGDQKKAHQSRAG 272


>U23523-7|AAC46562.2|   85|Caenorhabditis elegans Hypothetical
           protein F53A9.7 protein.
          Length = 85

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 24/85 (28%), Positives = 32/85 (37%), Gaps = 2/85 (2%)
 Frame = +3

Query: 264 HDQPHATNYIAAAAPVHYASPVHYAAPVAKVITPAHKVLVSAHHEEEYAHPKYDFAYSVA 443
           ++ P+  +   A  PVH A    Y  P        H   V  HH EE  H ++       
Sbjct: 9   YNAPYGGHGGYAPPPVHGAPG--YMPPTVVHTDGGHHGHVDTHHHEESHHGEHH------ 60

Query: 444 DGHSG--DNKSQHESRDGDAVHGEY 512
            GH G    +S HES      HG +
Sbjct: 61  GGHHGVQHYESHHESHHHGGHHGHH 85


>Z93390-6|CAB07675.4|  816|Caenorhabditis elegans Hypothetical
           protein T23B5.3a protein.
          Length = 816

 Score = 23.4 bits (48), Expect(2) = 8.7
 Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
 Frame = +3

Query: 393 HEEEYAHPKYDFAYSVADG-HSGDNKSQHESRDGDAVHGEY 512
           H   Y++P Y F Y +A   H   N     S    A +GE+
Sbjct: 42  HPHPYSYPLYTFPYPIAPAFHQAQNPPMTSSVASGA-NGEH 81



 Score = 21.8 bits (44), Expect(2) = 8.7
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = +3

Query: 363 PAHKVLVSAHHEEEYAHP 416
           P H V  S HH + Y  P
Sbjct: 20  PMHHVYPSHHHHQHYQLP 37


>Z80214-7|CAC42261.2|  816|Caenorhabditis elegans Hypothetical
           protein T23B5.3a protein.
          Length = 816

 Score = 23.4 bits (48), Expect(2) = 8.7
 Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
 Frame = +3

Query: 393 HEEEYAHPKYDFAYSVADG-HSGDNKSQHESRDGDAVHGEY 512
           H   Y++P Y F Y +A   H   N     S    A +GE+
Sbjct: 42  HPHPYSYPLYTFPYPIAPAFHQAQNPPMTSSVASGA-NGEH 81



 Score = 21.8 bits (44), Expect(2) = 8.7
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = +3

Query: 363 PAHKVLVSAHHEEEYAHP 416
           P H V  S HH + Y  P
Sbjct: 20  PMHHVYPSHHHHQHYQLP 37


>Z93390-1|CAE46674.1|  540|Caenorhabditis elegans Hypothetical
           protein T23B5.3b protein.
          Length = 540

 Score = 23.4 bits (48), Expect(2) = 9.0
 Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
 Frame = +3

Query: 393 HEEEYAHPKYDFAYSVADG-HSGDNKSQHESRDGDAVHGEY 512
           H   Y++P Y F Y +A   H   N     S    A +GE+
Sbjct: 42  HPHPYSYPLYTFPYPIAPAFHQAQNPPMTSSVASGA-NGEH 81



 Score = 21.8 bits (44), Expect(2) = 9.0
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = +3

Query: 363 PAHKVLVSAHHEEEYAHP 416
           P H V  S HH + Y  P
Sbjct: 20  PMHHVYPSHHHHQHYQLP 37


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,644,588
Number of Sequences: 27780
Number of extensions: 108529
Number of successful extensions: 454
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 453
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)