Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS334H09f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb...    26   3.9  
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   9.0  
SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces po...    25   9.0  

>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -2

Query: 337 FSSCNGNFAESFALNLYICVQI 272
           FS+C+GN ++  A NLY  + I
Sbjct: 514 FSACDGNLSDEKAKNLYSSILI 535


>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1060

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = -3

Query: 342 SNSAVVTATLPRASR*TCTFVFKSPNAPRTVNPSLFVGTAPLPFPRT 202
           SN+A   +   RA + T T     P +PR   P+L   T P  +P T
Sbjct: 233 SNAANSGSNTIRARQTTRTRSNTLPWSPRVFGPTLGYNTPPFGYPPT 279


>SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 220

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +3

Query: 279 TQMYKFNAKLSAKLPLQLL 335
           T  +KF+A L+AK PLQ L
Sbjct: 34  TYPHKFSADLAAKFPLQKL 52


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,002,253
Number of Sequences: 5004
Number of extensions: 38322
Number of successful extensions: 77
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)