Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS334H09f
         (521 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY578807-1|AAT07312.1|  438|Anopheles gambiae punt protein.            24   2.7  
AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.    23   6.2  

>AY578807-1|AAT07312.1|  438|Anopheles gambiae punt protein.
          Length = 438

 Score = 24.2 bits (50), Expect = 2.7
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -1

Query: 503 LQLWRSIQQCSLHGG 459
           L LW  + +C++HGG
Sbjct: 321 LVLWELVSRCTVHGG 335


>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
          Length = 1133

 Score = 23.0 bits (47), Expect = 6.2
 Identities = 9/34 (26%), Positives = 13/34 (38%)
 Frame = +2

Query: 128 ITIMEIQLRRHRSAQIQDQENLYAGVRGKGNGAV 229
           I +      RH   +   + NL  G  G G  A+
Sbjct: 90  IVLKNFMCHRHMVVEFNKRANLLVGKNGSGKSAI 123


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 504,210
Number of Sequences: 2352
Number of extensions: 9862
Number of successful extensions: 11
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 47783067
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)