Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS334H09f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024763-4|AAF60519.1| 1347|Caenorhabditis elegans Temporarily a...    29   1.5  
Z70284-13|CAB54280.1|  639|Caenorhabditis elegans Hypothetical p...    27   8.1  
Z70284-12|CAB54278.1|  549|Caenorhabditis elegans Hypothetical p...    27   8.1  
U58753-1|AAC24437.2|  814|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>AC024763-4|AAF60519.1| 1347|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 168 protein.
          Length = 1347

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
 Frame = +2

Query: 80  FNKVFEY*VKTKNSDNITIMEIQLRRHRSAQI---QDQENLYAGVRGKGNGAVPT 235
           F  +F+Y      + N    E+Q R+H+  ++   QD +  Y G  G+  G VP+
Sbjct: 827 FVALFDYTAAMSPNPNAEFEELQFRKHQLIKVYGGQDIDGFYHGAIGQRVGLVPS 881


>Z70284-13|CAB54280.1|  639|Caenorhabditis elegans Hypothetical
           protein K07F5.13c protein.
          Length = 639

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -3

Query: 285 FVFKSPNAPRTVNPSLFVGTAP 220
           F F +PNAP T + +LF  T P
Sbjct: 14  FTFPTPNAPTTSSGTLFGSTTP 35


>Z70284-12|CAB54278.1|  549|Caenorhabditis elegans Hypothetical
           protein K07F5.13b protein.
          Length = 549

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -3

Query: 285 FVFKSPNAPRTVNPSLFVGTAP 220
           F F +PNAP T + +LF  T P
Sbjct: 14  FTFPTPNAPTTSSGTLFGSTTP 35


>U58753-1|AAC24437.2|  814|Caenorhabditis elegans Hypothetical
           protein W03B1.2 protein.
          Length = 814

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -3

Query: 99  YSKTLLNVNKFTFKQFNCLYRPTMFYFSYFTNI 1
           Y+KT++      + + +CL+R T+  F  FT I
Sbjct: 547 YNKTVMEFFDMEYAEASCLFRSTIMPFVVFTYI 579


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,043,732
Number of Sequences: 27780
Number of extensions: 217057
Number of successful extensions: 467
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 467
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)