Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS334H08f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80955-5|AAG01559.2|  573|Caenorhabditis elegans Ferm domain (pr...    29   2.7  
U80955-4|ABB51180.1|  589|Caenorhabditis elegans Ferm domain (pr...    29   2.7  
Z81545-8|CAB04444.1|  327|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>U80955-5|AAG01559.2|  573|Caenorhabditis elegans Ferm domain
           (protein4.1-ezrin-radixin-moesin) family protein 2,
           isoform a protein.
          Length = 573

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +3

Query: 435 LLDGEHITIEVHRKARGEDLLDRICEDLD 521
           LLDG H+ I V R A G +L + +   LD
Sbjct: 41  LLDGAHLNIVVPRNAVGSELYEEVFYSLD 69


>U80955-4|ABB51180.1|  589|Caenorhabditis elegans Ferm domain
           (protein4.1-ezrin-radixin-moesin) family protein 2,
           isoform b protein.
          Length = 589

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +3

Query: 435 LLDGEHITIEVHRKARGEDLLDRICEDLD 521
           LLDG H+ I V R A G +L + +   LD
Sbjct: 57  LLDGAHLNIVVPRNAVGSELYEEVFYSLD 85


>Z81545-8|CAB04444.1|  327|Caenorhabditis elegans Hypothetical
           protein F49H6.11 protein.
          Length = 327

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 16/40 (40%), Positives = 26/40 (65%)
 Frame = +1

Query: 37  VLKN*ICNSILV*IFEILLFNCVLSINPYKFFFKTHICLN 156
           VLK+ +C++ILV  FE LL N +++I    F+   +I +N
Sbjct: 159 VLKDFVCSAILVLHFEKLLGNELMNITS-GFYLVLYIAVN 197


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,037,841
Number of Sequences: 27780
Number of extensions: 185019
Number of successful extensions: 311
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 311
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)