Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS334H07f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo... 29 0.42
SPAC227.07c |pab1||protein phosphatase regulatory subunit Pab1|S... 27 1.7
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual 27 2.2
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 26 3.9
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po... 25 5.2
SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|... 25 5.2
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 6.8
SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomy... 25 6.8
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar... 25 6.8
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ... 25 6.8
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 25 9.0
>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
Wis4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1401
Score = 29.1 bits (62), Expect = 0.42
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +1
Query: 421 DMYEKEYDYLKSQIAFSNENIYGTKAEEI 507
++Y KE D+L+++ AF NE+IY +I
Sbjct: 565 NLYFKEIDFLENEWAFLNEHIYWINGGDI 593
>SPAC227.07c |pab1||protein phosphatase regulatory subunit
Pab1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 463
Score = 27.1 bits (57), Expect = 1.7
Identities = 25/119 (21%), Positives = 46/119 (38%), Gaps = 1/119 (0%)
Frame = +1
Query: 163 LAENEKNLQFWVNYLKELRELDLNVFADKLTVPTLVPIGNRILFR-GEIIHTNEITVSLG 339
L+ N+K ++ W Y K L+ + N +D P P+ R + H + I +
Sbjct: 108 LSTNDKTIKLWKLYEKNLKVVAENNLSDSFHSPMQGPLTTPSQLRLPRLNHHDMIIAAYP 167
Query: 340 ADYFAKCSLKQAEILKQHRIKDAETKVDMYEKEYDYLKSQIAFSNENIYGTKAEEIVEI 516
+A + + DAET + + + I+ + NI K E + E+
Sbjct: 168 RRVYANAHAYHINSISVN--SDAETYISADDLRINLWNLSISDHSFNIVDIKPENMEEL 224
>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 978
Score = 26.6 bits (56), Expect = 2.2
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +1
Query: 319 EITVSLGADYFAKCSLK-QAEILKQHRIKDAETKVDMYEKEYDYLKSQIAFSNENIYGT 492
++ +S+G + LK +I K + +KDA DM + + +A+SN YGT
Sbjct: 149 KVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGT 207
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 25.8 bits (54), Expect = 3.9
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = +1
Query: 376 EILKQHRIKDAETK--VDMYEKEYDYLKSQIAFSNENI 483
E L+ H+ +A K ++ EKE L+SQ+ +NE +
Sbjct: 335 EQLESHKEAEASLKSQINFLEKEVSSLESQLKLANERL 372
>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1564
Score = 25.4 bits (53), Expect = 5.2
Identities = 16/67 (23%), Positives = 32/67 (47%)
Frame = +1
Query: 154 VKRLAENEKNLQFWVNYLKELRELDLNVFADKLTVPTLVPIGNRILFRGEIIHTNEITVS 333
V +L EN ++ +N+ + + + F L +PT + ++ L E++H T S
Sbjct: 434 VYQLFENNDSVTRLLNFARARFPFEYSQFV-LLLIPTFACLTSKQLVSSELLHMTTFTQS 492
Query: 334 LGADYFA 354
L + + A
Sbjct: 493 LPSGFKA 499
>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 618
Score = 25.4 bits (53), Expect = 5.2
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -1
Query: 74 YTFMVCWYSFNTIFLILR 21
YTF +CW S TI +L+
Sbjct: 486 YTFEICWKSAKTIVQLLK 503
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 25.0 bits (52), Expect = 6.8
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Frame = -3
Query: 495 FSSINVFIAKCYLTFQIIIFFFVHIYFGFS--IFYSMLF 385
F+ + + +C L F + FF+ F FS F S +F
Sbjct: 105 FTGSELSLFRCLLLFFFFLLFFLSFSFSFSFLFFLSQIF 143
>SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 581
Score = 25.0 bits (52), Expect = 6.8
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = -1
Query: 392 CCFNISACFNEH 357
C FNIS+ FNEH
Sbjct: 16 CFFNISSSFNEH 27
>SPAC6C3.06c |||P-type ATPase, calcium
transporting|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1033
Score = 25.0 bits (52), Expect = 6.8
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Frame = +1
Query: 205 LKELRELDLNVF---ADKLTVPTLVPIGNRILFRGEIIHT 315
L+ LR ++V+ DK+ + I +R++ RG+ IHT
Sbjct: 648 LELLRNAGIHVWMLTGDKVETARCIAISSRLVSRGQYIHT 687
>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 25.0 bits (52), Expect = 6.8
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
Frame = +1
Query: 109 PVPYIKAMNFLTDIYVKRLAENEKNLQFWVNYLKELRELDL-----NVFADKLTVPTL 267
PVP+ ++ + EN+ NL+ W ++ RE+D V ++LTV TL
Sbjct: 315 PVPHRADLSRTQKSELFPYIENQGNLRDWNEEIQSTREMDHEDVQDRVLRERLTVKTL 372
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 24.6 bits (51), Expect = 9.0
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Frame = +1
Query: 43 LKLYQQTIKVYKHTTRVSFL*QPVPYIKAMNFLTDIYVKRLAENEKN-LQFWVNYLKELR 219
+ + Q + + H R++ + Q Y++ + L +RL N KN + FW YLK+ +
Sbjct: 933 IDIIMQQLFMLIHDRRLTIVPQFEDYVQELESL-----RRL--NYKNCISFWKKYLKDFK 985
Query: 220 ELDLNVFADKLTVPTL 267
L+ +K+ V L
Sbjct: 986 FKSLSYQREKMGVVEL 1001
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,001,011
Number of Sequences: 5004
Number of extensions: 39772
Number of successful extensions: 102
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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