Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS334H07f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0047 + 40731508-40731714,40731834-40731893,40731992-407321... 48 3e-06
09_02_0496 - 9892242-9892499,9892956-9893045,9893046-9893094,989... 31 0.74
10_01_0307 + 3382432-3382608,3382690-3382863,3383600-3383695,338... 29 2.3
06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,890... 28 4.0
01_06_1123 + 34671365-34671883,34672366-34672625,34673045-346731... 28 4.0
11_04_0301 + 16142236-16142945,16143748-16144247,16144557-161446... 28 5.2
11_06_0022 + 19321886-19321918,19323059-19323131,19323587-193236... 27 6.9
01_01_0931 - 7351306-7351371,7351620-7351772,7352343-7352484,735... 27 9.1
>01_07_0047 +
40731508-40731714,40731834-40731893,40731992-40732159,
40732198-40732203,40732898-40732961,40733395-40733690,
40733799-40733903,40734030-40734066,40734309-40734403,
40735226-40735282,40735361-40735438,40735527-40735586
Length = 410
Score = 48.4 bits (110), Expect = 3e-06
Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Frame = +1
Query: 244 DKLTVPTLVPIGNRILFRGEIIHTNEITVSLGADYFAKCSLKQAEILKQHRIKDAETKVD 423
D+++ +VP G F G +IHTNE+ V LG Y+ + S KQ + R + E +V+
Sbjct: 62 DEVSHDIMVPFGGAAFFPGRLIHTNELLVLLGEGYYVERSAKQTTEILHRRGMELEAQVE 121
Query: 424 MYEKEYDYLKSQIAFSNENIYGTKA-EEIVEI 516
+ L+++ F A E ++EI
Sbjct: 122 AMKATISDLEAEAKFFESTAAEASAVEGLIEI 153
>09_02_0496 -
9892242-9892499,9892956-9893045,9893046-9893094,
9893330-9893557,9894095-9894261,9894312-9894395,
9894614-9894820,9894919-9895251,9895371-9895513,
9895607-9895723,9895824-9895980,9896054-9896157,
9896272-9896432,9896518-9896707,9896732-9896834,
9896950-9897231,9897327-9897649,9897750-9897786,
9898109-9898162,9898292-9898368,9898449-9898502,
9898738-9898822,9900289-9900426,9900592-9900603
Length = 1150
Score = 30.7 bits (66), Expect = 0.74
Identities = 17/65 (26%), Positives = 32/65 (49%)
Frame = +1
Query: 142 TDIYVKRLAENEKNLQFWVNYLKELRELDLNVFADKLTVPTLVPIGNRILFRGEIIHTNE 321
TDIY+K E+ + N++ L+ L L++ AD + P + ++ G + +E
Sbjct: 117 TDIYLKAATTGEEKAEIVTNHI--LKILRLDICADTIVAPNVDSAAEMLVTLGRALFMDE 174
Query: 322 ITVSL 336
I+ L
Sbjct: 175 ISNGL 179
>10_01_0307 +
3382432-3382608,3382690-3382863,3383600-3383695,
3384640-3384709,3385878-3386002,3387128-3387268,
3387362-3387519,3387644-3387803,3390136-3390213,
3390326-3390385,3390473-3390528,3391886-3392090,
3394107-3394192,3394296-3394406,3394536-3394607,
3395453-3395538,3395730-3395878,3396107-3396250,
3396335-3396442,3396997-3397027,3397609-3397713,
3398283-3398407,3398807-3398950,3399073-3399177,
3400748-3400799,3401549-3401696,3401936-3402130,
3402404-3402647,3403152-3403259,3403887-3404034,
3405467-3405525,3405876-3405945,3407008-3407333,
3407666-3409204,3410526-3410733,3410870-3410906,
3411024-3411072,3411143-3411271
Length = 2025
Score = 29.1 bits (62), Expect = 2.3
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = -2
Query: 487 HKCFHC*MLFDFSDNHILFRTYLLWFQHLLFYVVLI-SRLVSTNTWQNNRPLKKP 326
H C +L +FS I RT +++ L F +L S +N+ NNR KP
Sbjct: 786 HSCNIIDVLSEFSQPSIEMRTCIIFHLQLAFIKILSQSHYACSNSEDNNRTSNKP 840
>06_01_1087 +
8901950-8902102,8902960-8903996,8904438-8904586,
8905437-8905690,8905785-8908799,8908889-8909001,
8909975-8910164,8910399-8910512,8910591-8910698,
8910941-8911073,8911206-8911408,8911626-8911826
Length = 1889
Score = 28.3 bits (60), Expect = 4.0
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -1
Query: 83 VCLYTFMVCWYSFNTIFLILRTIS 12
VCL +VCW F+TI+++L IS
Sbjct: 641 VCLAP-LVCWVHFHTIYMLLNFIS 663
>01_06_1123 +
34671365-34671883,34672366-34672625,34673045-34673143,
34673237-34675178,34675588-34675658,34676158-34676307,
34676963-34677038,34677131-34677232,34677707-34677855,
34678214-34678364
Length = 1172
Score = 28.3 bits (60), Expect = 4.0
Identities = 13/41 (31%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +1
Query: 157 KRLAENEKNLQFWVNYLKELRE-LDLNVFADKLTVPTLVPI 276
++LAEN++ + W+N + +L + DL+ A P ++PI
Sbjct: 344 RKLAENDQKAERWLNKVSQLDDSADLSSLAADEDFPEIMPI 384
>11_04_0301 +
16142236-16142945,16143748-16144247,16144557-16144649,
16144879-16145005,16145265-16145468,16145587-16145692
Length = 579
Score = 27.9 bits (59), Expect = 5.2
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -1
Query: 401 FILCCFNISACFNEHLAK*SAPKETVISFVCIISPLNNIR 282
F+LCC CF +A + P ++ VC+ S L N+R
Sbjct: 516 FLLCCHTALNCFPAAVAPLTLP----LNCVCMFSHLKNVR 551
>11_06_0022 +
19321886-19321918,19323059-19323131,19323587-19323680,
19324383-19324499,19324584-19324641,19324713-19325114
Length = 258
Score = 27.5 bits (58), Expect = 6.9
Identities = 18/56 (32%), Positives = 26/56 (46%)
Frame = +1
Query: 205 LKELRELDLNVFADKLTVPTLVPIGNRILFRGEIIHTNEITVSLGADYFAKCSLKQ 372
+K++ + D +V L VP LV + + I T EIT+ GA LKQ
Sbjct: 14 IKKIMQADEDVGKIALAVPVLVSRALELFLQDLIDRTYEITLQSGAKTLNSFHLKQ 69
>01_01_0931 -
7351306-7351371,7351620-7351772,7352343-7352484,
7352604-7352791,7353117-7353179,7353541-7353585,
7353658-7353792,7354515-7354623,7355032-7355084,
7355168-7355317,7355714-7355722,7356161-7356577
Length = 509
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +1
Query: 343 DYFAKCSLKQAEILKQHRIKDAET-KVDMYEKEYDYLKSQIAF 468
D F +C L L+ +K + KV M++K YD+L F
Sbjct: 302 DPFTECYLSLCIALRNRNLKLVKLWKVSMFKKNYDHLPKDTYF 344
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,894,417
Number of Sequences: 37544
Number of extensions: 190987
Number of successful extensions: 463
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 463
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -