Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS334H07f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006625-4|AAK68276.1|  446|Caenorhabditis elegans Hypothetical ...    46   2e-05
U00036-1|AAK29855.1|  152|Caenorhabditis elegans Hypothetical pr...    30   1.2  
AF303258-1|AAG50216.1|  152|Caenorhabditis elegans 3H288 protein.      30   1.2  
Z81132-13|CAB03427.2|  308|Caenorhabditis elegans Hypothetical p...    29   2.7  
U53335-1|AAA96169.1|  431|Caenorhabditis elegans Hypothetical pr...    29   2.7  
U49830-13|AAK31474.1|  826|Caenorhabditis elegans Hypothetical p...    28   4.7  
AF067216-4|AAC17526.1|  262|Caenorhabditis elegans Hypothetical ...    28   4.7  
AF067216-3|AAC17525.1|  430|Caenorhabditis elegans Hypothetical ...    28   4.7  
Z68219-3|CAA92480.2|  747|Caenorhabditis elegans Hypothetical pr...    27   6.2  
AC006674-13|AAF39942.1|  281|Caenorhabditis elegans Hypothetical...    27   6.2  
Z29117-1|CAA82376.1|  659|Caenorhabditis elegans Hypothetical pr...    27   8.1  
U64598-12|AAX88835.1|  408|Caenorhabditis elegans Choline kinase...    27   8.1  
U64598-11|AAK39220.1|  429|Caenorhabditis elegans Choline kinase...    27   8.1  

>AC006625-4|AAK68276.1|  446|Caenorhabditis elegans Hypothetical
           protein C55B7.5 protein.
          Length = 446

 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 31/112 (27%), Positives = 52/112 (46%), Gaps = 5/112 (4%)
 Frame = +1

Query: 199 NYLKELRELDLNVFADKLTVPTLVPIGNRILFRG-EIIHTNEITVSLGADYFAKCSLKQA 375
           NY K L       ++ KL  P L  I     F G  ++ TN++T+ +GA+Y+ +CS+  A
Sbjct: 29  NYEKVLERA--KEYSKKLEAPILAKICEVGYFCGAHVVRTNQVTMEMGANYYGECSIHTA 86

Query: 376 EILKQHRIKDAETKVDMYEKEYDYLKSQIAFSNENIYGTKAE----EIVEIY 519
           E +   R+ +   + +        L  +I F+ +N      +    EIVE Y
Sbjct: 87  EKILDRRVSEMRRQREEGLDSIRMLDDKIKFAQDNFSSVSIDGGPIEIVEKY 138


>U00036-1|AAK29855.1|  152|Caenorhabditis elegans Hypothetical
           protein R151.9 protein.
          Length = 152

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 25/110 (22%), Positives = 54/110 (49%), Gaps = 18/110 (16%)
 Frame = +1

Query: 139 LTDIYVKRLAENEKNLQFWVNYLKE--------LRELDLNVFA-DKLTVPT-----LVPI 276
           L+++ +++L E +KN +  +N+ +E        L   + ++ A D + + T     L+P+
Sbjct: 10  LSELSLQQLGELQKNCEQELNFFQESFNALKGLLTRNEKSISALDDVKIATAGHTALIPL 69

Query: 277 GNRILFRGEIIHTNEITVSLGADYFAKCSLKQAEIL----KQHRIKDAET 414
              +  R E+   ++  V +G  YF +   ++A+ +    K+H  K  ET
Sbjct: 70  SESLYIRAELSDPSKHLVEIGTGYFVELDREKAKAIFDRKKEHITKQVET 119


>AF303258-1|AAG50216.1|  152|Caenorhabditis elegans 3H288 protein.
          Length = 152

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 25/110 (22%), Positives = 54/110 (49%), Gaps = 18/110 (16%)
 Frame = +1

Query: 139 LTDIYVKRLAENEKNLQFWVNYLKE--------LRELDLNVFA-DKLTVPT-----LVPI 276
           L+++ +++L E +KN +  +N+ +E        L   + ++ A D + + T     L+P+
Sbjct: 10  LSELSLQQLGELQKNCEQELNFFQESFNALKGLLTRNEKSISALDDVKIATAGHTALIPL 69

Query: 277 GNRILFRGEIIHTNEITVSLGADYFAKCSLKQAEIL----KQHRIKDAET 414
              +  R E+   ++  V +G  YF +   ++A+ +    K+H  K  ET
Sbjct: 70  SESLYIRAELSDPSKHLVEIGTGYFVELDREKAKAIFDRKKEHITKQVET 119


>Z81132-13|CAB03427.2|  308|Caenorhabditis elegans Hypothetical
           protein T26E4.14 protein.
          Length = 308

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = -3

Query: 486 INVFIAKCYLTFQIIIFFFVHIYFGFSIFYSMLF*YLGLFQRTLGKII 343
           I V +   Y T +   F+++ I   F + Y++   Y+G  QR  G+I+
Sbjct: 101 IAVALPARYKTLEHDRFWYLLILIAFPVVYALALLYIGFTQRDPGRIV 148


>U53335-1|AAA96169.1|  431|Caenorhabditis elegans Hypothetical
           protein C55C3.4 protein.
          Length = 431

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +1

Query: 214 LRELDLNVFADKLTVPTLVPIGNRILFRGEIIHTNEITVSL 336
           +RE D  V+ DK+  PT++ + N  +   E   T + TV +
Sbjct: 63  VREADHKVYVDKIGFPTIIELVNHYVSTKESFSTKDGTVKV 103


>U49830-13|AAK31474.1|  826|Caenorhabditis elegans Hypothetical
           protein C33F10.2 protein.
          Length = 826

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = +2

Query: 77  NILHGFLFCNNLYLTSKQ 130
           NI+HGFL  N++Y+T ++
Sbjct: 110 NIVHGFLHLNSIYITDRK 127


>AF067216-4|AAC17526.1|  262|Caenorhabditis elegans Hypothetical
           protein C35E7.10b protein.
          Length = 262

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +1

Query: 214 LRELDLNVFADKLTVPTLVPIGNRILFRGEIIHTNEITV 330
           +RE D  V+ DK+  PT++ + N  +   E   T + TV
Sbjct: 63  VRESDHKVYVDKIGFPTIIELVNHYVSTKESFSTKDGTV 101


>AF067216-3|AAC17525.1|  430|Caenorhabditis elegans Hypothetical
           protein C35E7.10a protein.
          Length = 430

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +1

Query: 214 LRELDLNVFADKLTVPTLVPIGNRILFRGEIIHTNEITV 330
           +RE D  V+ DK+  PT++ + N  +   E   T + TV
Sbjct: 63  VRESDHKVYVDKIGFPTIIELVNHYVSTKESFSTKDGTV 101


>Z68219-3|CAA92480.2|  747|Caenorhabditis elegans Hypothetical
           protein T05A1.3 protein.
          Length = 747

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 32  RKSY*NYTNKP*KCINILHGFLF 100
           RK Y NY N+P K +N+L   LF
Sbjct: 676 RKKYKNYDNEPHKFVNVLIFLLF 698


>AC006674-13|AAF39942.1|  281|Caenorhabditis elegans Hypothetical
           protein K12H6.7 protein.
          Length = 281

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 11/46 (23%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = -2

Query: 466 MLFDFSDNHILFRTYLLWFQHLLFYV-VLISRLVSTNTWQNNRPLK 332
           +L +F ++  +FR    WF + L +  +++S+   T+ W  +  +K
Sbjct: 134 VLDNFQEDSAIFRMKYFWFTYSLEHAPIVLSKFQGTHLWMTDANIK 179


>Z29117-1|CAA82376.1|  659|Caenorhabditis elegans Hypothetical
           protein C48B4.1 protein.
          Length = 659

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 18/52 (34%), Positives = 28/52 (53%)
 Frame = +1

Query: 343 DYFAKCSLKQAEILKQHRIKDAETKVDMYEKEYDYLKSQIAFSNENIYGTKA 498
           D FAK  L   E + +HR+  A  +  M E+E   ++   AF+N ++  TKA
Sbjct: 477 DKFAKM-LSHFEHIARHRVMHAYRQ--MIEEEKQGIERDYAFANHSVDWTKA 525


>U64598-12|AAX88835.1|  408|Caenorhabditis elegans Choline kinase a
           protein 2, isoformb protein.
          Length = 408

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 5/50 (10%)
 Frame = +1

Query: 148 IYVKRLAENEKNLQFWVNYLKE---LRELDLNVFADKLTVPTL--VPIGN 282
           I  +   EN++ L+F++NYL+E    RE +L   ++ L   TL  VP+ +
Sbjct: 314 IQTENFPENDQMLEFFLNYLREQGNTRENELYKKSEDLVQETLPFVPVSH 363


>U64598-11|AAK39220.1|  429|Caenorhabditis elegans Choline kinase a
           protein 2, isoforma protein.
          Length = 429

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 5/50 (10%)
 Frame = +1

Query: 148 IYVKRLAENEKNLQFWVNYLKE---LRELDLNVFADKLTVPTL--VPIGN 282
           I  +   EN++ L+F++NYL+E    RE +L   ++ L   TL  VP+ +
Sbjct: 335 IQTENFPENDQMLEFFLNYLREQGNTRENELYKKSEDLVQETLPFVPVSH 384


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,682,383
Number of Sequences: 27780
Number of extensions: 212425
Number of successful extensions: 621
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 621
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)