Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS334H06f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1486.01 |||manganese superoxide dismutase |Schizosaccharomyc... 109 3e-25
SPBC3H7.04 |||mitochondrial ribosomal protein subunit S26|Schizo... 56 3e-09
SPBC16A3.14 |||mitochondrial ribosomal protein subunit S26|Schiz... 41 1e-04
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||... 30 0.18
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 27 1.7
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c... 26 3.0
SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease ... 25 6.8
SPBC1A4.06c |||mitochondrial matrix protein import protein|Schiz... 25 6.8
SPBC1271.04c |||deoxyhypusine synthase|Schizosaccharomyces pombe... 25 6.8
>SPAC1486.01 |||manganese superoxide dismutase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 218
Score = 109 bits (261), Expect = 3e-25
Identities = 54/124 (43%), Positives = 77/124 (62%), Gaps = 5/124 (4%)
Frame = -3
Query: 519 HSIFWHNLSPN---GGKP--SDVLTKAVEKDFGSWDNLKNQLSTASVAVQGSGWGWLGYN 355
HS+FW L+P GGKP S L KA+ +GS ++ + +++ A ++QGSGW WL +
Sbjct: 96 HSLFWKILAPQKEGGGKPVTSGSLHKAITSKWGSLEDFQKEMNAALASIQGSGWAWLIVD 155
Query: 354 KQMKKLQIATCQNQDPLQATTGLVPLFGIDVWEHAYYLQYKNVRADYVKAIFDVANWNDI 175
K L+I T NQD + + P+ GID WEHAYY QY+N +A+Y KAI++V NW +
Sbjct: 156 KD-GSLRITTTANQDTIVKSK---PIIGIDAWEHAYYPQYENRKAEYFKAIWNVINWKEA 211
Query: 174 SQRY 163
RY
Sbjct: 212 ESRY 215
>SPBC3H7.04 |||mitochondrial ribosomal protein subunit
S26|Schizosaccharomyces pombe|chr 2|||Manual
Length = 220
Score = 56.0 bits (129), Expect = 3e-09
Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 10/112 (8%)
Frame = -3
Query: 465 LTKAVEKDFGSWDNLKNQLSTASVAVQGSGWGWLGYNKQMKKLQIATCQNQD-------- 310
L ++ FGS+ LK+Q+ +V G GW WL Y+ + + N
Sbjct: 102 LKPGIDASFGSFGELKSQMVDVGNSVFGDGWLWLVYSPEKSLFSLLCTYNASNAFLWGTG 161
Query: 309 -PLQATTGLVPLFGIDVWEHAYYLQY-KNVRADYVKAIFDVANWNDISQRYE 160
P T +VPL +++W++AY Y N + Y+ +D+ NW ++ R++
Sbjct: 162 FPKFRTNAIVPLLCVNLWQYAYLDDYGLNGKKMYITKWWDMINWTVVNNRFQ 213
>SPBC16A3.14 |||mitochondrial ribosomal protein subunit
S26|Schizosaccharomyces pombe|chr 2|||Manual
Length = 277
Score = 40.7 bits (91), Expect = 1e-04
Identities = 33/128 (25%), Positives = 60/128 (46%), Gaps = 23/128 (17%)
Frame = -3
Query: 465 LTKAVEKDFGSWDNLKNQLSTASVAVQGSGWGWL---GYNKQ--MKKLQIAT------CQ 319
+ KAV ++FGS +NL +++ + G+ W W+ YN+ ++ Q + Q
Sbjct: 140 INKAVNENFGSKENLLSKIHELASNSFGACWLWIVIDDYNRLNLLRTFQAGSPYLWTRWQ 199
Query: 318 NQDPLQATT-----------GLVPLFGIDVWEHAYYLQYKNV-RADYVKAIFDVANWNDI 175
+ DP ++ VP+ + +W HAYY Y + R+ Y+ FD +W+ I
Sbjct: 200 SNDPHLISSVPDYSARPRKYAHVPILNLCLWNHAYYKDYGLLNRSRYIDTWFDCIDWSVI 259
Query: 174 SQRYEKAL 151
+R +L
Sbjct: 260 EERLTNSL 267
>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1101
Score = 30.3 bits (65), Expect = 0.18
Identities = 16/56 (28%), Positives = 29/56 (51%)
Frame = +1
Query: 148 LERFFISLRYIIPIGYIENSFHVVGTNVLVLKIVRVLPYIDSEERDQSSGGLQRIL 315
+ R+ + L II + H +V ++K + +P +D+EER + GLQ I+
Sbjct: 388 IPRYSLFLDQIILLTQEGECQHTYVRSVEIIKNIAEMPTVDAEERSRIFAGLQHII 443
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 27.1 bits (57), Expect = 1.7
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -3
Query: 321 QNQDPLQATTGLVPLFGIDVW 259
++ DPL+AT+ +PLF + W
Sbjct: 2142 KHTDPLRATSDFIPLFSMQRW 2162
>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
2|||Manual
Length = 658
Score = 26.2 bits (55), Expect = 3.0
Identities = 8/18 (44%), Positives = 15/18 (83%)
Frame = -1
Query: 302 RPPLDWSRSSESMYGSTR 249
+PPL WS SS +++G+++
Sbjct: 101 KPPLTWSPSSANLFGTSK 118
>SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 560
Score = 25.0 bits (52), Expect = 6.8
Identities = 15/57 (26%), Positives = 24/57 (42%)
Frame = -3
Query: 354 KQMKKLQIATCQNQDPLQATTGLVPLFGIDVWEHAYYLQYKNVRADYVKAIFDVANW 184
KQ++ + DP QA+ +V + GI YL+ N D + + V W
Sbjct: 398 KQLENQDLIDLLTDDPTQASVHMVTMMGIHPNSLLDYLEQYNSSFDKIIG-YKVTGW 453
>SPBC1A4.06c |||mitochondrial matrix protein import
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 383
Score = 25.0 bits (52), Expect = 6.8
Identities = 12/44 (27%), Positives = 21/44 (47%)
Frame = -3
Query: 303 QATTGLVPLFGIDVWEHAYYLQYKNVRADYVKAIFDVANWNDIS 172
QA + +G V+ A Y Q +N D++ + D W+ I+
Sbjct: 69 QAPIDVAVGYGSGVFRQAGYSQKENPMIDFIFQVEDPVKWHKIN 112
>SPBC1271.04c |||deoxyhypusine synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 350
Score = 25.0 bits (52), Expect = 6.8
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -3
Query: 480 KPSDVLTKAVEKDFGSWDNLK 418
KPSD+ T+ V DF +D K
Sbjct: 16 KPSDLTTEVVGPDFNKYDERK 36
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,263,543
Number of Sequences: 5004
Number of extensions: 47999
Number of successful extensions: 130
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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