Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS334H06f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0512 + 14913356-14913769,14915907-14916032,14916129-149161... 123 8e-29
06_01_0314 + 2255908-2255979,2256354-2256512,2257021-2257209,225... 82 3e-16
06_01_0109 - 863806-864045,864448-864566,864680-864851,864914-86... 60 1e-09
12_02_0659 - 21612325-21612328,21613164-21613199,21613279-216133... 30 0.98
05_01_0355 - 2774217-2774318,2774608-2774775,2774872-2775090,277... 29 2.3
12_01_0485 - 3848721-3849227,3852019-3852369 29 3.0
04_01_0266 - 3563075-3563109,3563405-3564754,3564862-3564965,356... 28 5.2
02_05_0936 - 32875479-32875573,32875794-32876028,32877752-328778... 28 5.2
01_06_0583 + 30400317-30401681 27 6.9
09_04_0193 - 15492102-15492746,15492833-15492946,15493042-154933... 27 9.1
06_03_1325 - 29334401-29334859,29335163-29335857,29336538-293367... 27 9.1
>05_03_0512 +
14913356-14913769,14915907-14916032,14916129-14916185,
14916950-14917027,14917681-14917773
Length = 255
Score = 123 bits (297), Expect = 8e-29
Identities = 58/112 (51%), Positives = 72/112 (64%), Gaps = 1/112 (0%)
Frame = -3
Query: 486 GGKPSDVLTKAVEKDFGSWDNLKNQLSTASVAVQGSGWGWLGYNKQMKKLQIATCQNQDP 307
G P L A+++DFGS++ L ++S A+QGSGW WL +K+ KKL + T NQDP
Sbjct: 142 GDPPHAKLGWAIDEDFGSFEALVKKMSAEGAALQGSGWVWLALDKEAKKLSVETTANQDP 201
Query: 306 LQAT-TGLVPLFGIDVWEHAYYLQYKNVRADYVKAIFDVANWNDISQRYEKA 154
L LVPL GIDVWEHAYYLQYKNVR DY+ I+ V NW + YE A
Sbjct: 202 LVTKGANLVPLLGIDVWEHAYYLQYKNVRPDYLSNIWKVMNWKYAGEVYENA 253
>06_01_0314 +
2255908-2255979,2256354-2256512,2257021-2257209,
2257390-2257561,2257711-2257784,2257818-2257904,
2257975-2257998,2258100-2258225
Length = 300
Score = 81.8 bits (193), Expect = 3e-16
Identities = 44/143 (30%), Positives = 71/143 (49%), Gaps = 21/143 (14%)
Frame = -3
Query: 519 HSIFWHNLSPNGG-KPSDVLTKAVEKDFGSWDNLKNQLSTASVAVQGSGWGWLGYNKQMK 343
H FW ++ P GG P + + +EKDFGS+ N + + +++++ GSGW WL ++ +
Sbjct: 144 HHFFWESMQPEGGGSPGRGVLQQIEKDFGSFTNFREEFIRSALSLLGSGWVWLVLKRKER 203
Query: 342 KLQIATCQNQ-------------------DPLQATTGLVPLFGIDVWEHAYYLQYKNVRA 220
K + QN D + L PL +D+WEHAYYL YK+ R
Sbjct: 204 KFSVVHTQNAISPLALGDINNSIPSINLCDDIPCPLLLQPLINLDLWEHAYYLDYKDDRR 263
Query: 219 DYVKAIFD-VANWNDISQRYEKA 154
YV D + +W+ ++ R +A
Sbjct: 264 MYVTNFIDHLVSWDTVTLRMMRA 286
>06_01_0109 -
863806-864045,864448-864566,864680-864851,864914-865108,
865179-865388,865738-865926
Length = 374
Score = 59.7 bits (138), Expect = 1e-09
Identities = 34/126 (26%), Positives = 62/126 (49%), Gaps = 3/126 (2%)
Frame = -3
Query: 519 HSIFWHNLSPNGG-KPSDVLTKAVEKDFGSWDNLKNQLSTASVAVQGSGWGWLGYNKQMK 343
H +W ++ P GG KP + L K + +DFGS+D + Q A+ GSGW WL Y K
Sbjct: 202 HDFYWRSMQPGGGGKPPERLLKFINRDFGSYDGMIRQFMDAASTQFGSGWVWLCY----K 257
Query: 342 KLQIATCQNQDPLQATT-GLVPLFGIDVWEHAYYLQYKNVRADYVKAIFD-VANWNDISQ 169
++ +++ P+ + G + + + + + R+DYV + + +W +
Sbjct: 258 TSKLPHVKSRSPIPSDNYGRLVISKSPNAINPLVWGHSDRRSDYVSTFLEKLVSWETVES 317
Query: 168 RYEKAL 151
R +KA+
Sbjct: 318 RLKKAV 323
>12_02_0659 -
21612325-21612328,21613164-21613199,21613279-21613394,
21613983-21614567
Length = 246
Score = 30.3 bits (65), Expect = 0.98
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +1
Query: 253 VLPYIDSEERDQSSGGLQRILVLACSYLQFLH 348
+ PY + EE D +SG ++ VL C +LQF H
Sbjct: 53 IFPYYEHEEIDSASGEKKK--VLPCYFLQFQH 82
>05_01_0355 -
2774217-2774318,2774608-2774775,2774872-2775090,
2775176-2775319,2775485-2775767,2775874-2775929,
2776012-2776161,2776254-2776340,2776414-2776449,
2777100-2777162,2777247-2777327,2777407-2777496,
2777690-2777767,2777855-2778058,2778139-2778186,
2778262-2778447,2779879-2779978,2780121-2780260
Length = 744
Score = 29.1 bits (62), Expect = 2.3
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +1
Query: 112 LNWFNRFF*NYSLERFFISLRYIIPI 189
+ W +RFF + L+R+FIS R +IP+
Sbjct: 108 VRWLSRFF--FYLDRYFISRRSLIPL 131
>12_01_0485 - 3848721-3849227,3852019-3852369
Length = 285
Score = 28.7 bits (61), Expect = 3.0
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = -2
Query: 367 AWLQQTNEEIANSYMPEPGSSAGHH-WIGPALR 272
AW E I + PG+ AG+H W+GP R
Sbjct: 134 AWKSWLEEHITATGKAPPGNVAGNHTWVGPPQR 166
>04_01_0266 -
3563075-3563109,3563405-3564754,3564862-3564965,
3564967-3565421
Length = 647
Score = 27.9 bits (59), Expect = 5.2
Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 1/86 (1%)
Frame = -3
Query: 426 NLKNQLSTASVAVQGSGWGWLGYNKQMKKLQIATCQNQDPLQATTGLVPLFGIDV-WEHA 250
+L+ ++T + GW G Q+ L Q + L + GID W+
Sbjct: 323 SLRRLITTMTAGYLNRSRGWSGTIGQLNLLSFRAAQINATDRCLRKLAMMLGIDEWWDST 382
Query: 249 YYLQYKNVRADYVKAIFDVANWNDIS 172
Y + V + + D+ + ND++
Sbjct: 383 CYSWIEEVPMEVKEGAVDMVSRNDLN 408
>02_05_0936 -
32875479-32875573,32875794-32876028,32877752-32877848,
32878863-32878927,32879506-32879571,32879735-32879842,
32880169-32880303,32880582-32880647,32881172-32881222,
32881312-32881386,32881834-32881896,32882694-32882783,
32882903-32883100,32883189-32883315,32883482-32884100,
32884228-32884265,32884651-32884718,32885056-32885100,
32885243-32885302,32885510-32885593,32885677-32885868,
32887361-32887663
Length = 959
Score = 27.9 bits (59), Expect = 5.2
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -2
Query: 409 VDSFCGSTGLRLGLAWLQQTNEEIANSYM 323
VD GS GL+ + L QT EE+A +++
Sbjct: 2 VDKNDGSEGLKFNTSHLMQTTEEVARAFI 30
>01_06_0583 + 30400317-30401681
Length = 454
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/20 (60%), Positives = 17/20 (85%)
Frame = +3
Query: 363 QANPSLSPVLPQKLSTVDSL 422
+ANPSLS V+P +L+T+ SL
Sbjct: 140 RANPSLSGVMPPQLATLRSL 159
>09_04_0193 -
15492102-15492746,15492833-15492946,15493042-15493332,
15493412-15493720,15493815-15494552
Length = 698
Score = 27.1 bits (57), Expect = 9.1
Identities = 8/21 (38%), Positives = 15/21 (71%)
Frame = -3
Query: 270 IDVWEHAYYLQYKNVRADYVK 208
I+ W H+ Y+ + + RADY++
Sbjct: 159 IEGWAHSAYISWMSFRADYIR 179
>06_03_1325 -
29334401-29334859,29335163-29335857,29336538-29336750,
29338791-29339472,29339781-29340020
Length = 762
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +3
Query: 321 GM*LFAISSFVCCSQANPSLSPVLPQKLSTVDSLSYP 431
G+ L A+ + + P SP+ P+K VD + YP
Sbjct: 12 GLALLALQPLIAAASRRPPPSPLCPKKCGNVD-IEYP 47
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,630,833
Number of Sequences: 37544
Number of extensions: 318303
Number of successful extensions: 905
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 876
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 902
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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