Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS334H03f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr 2|||M...    85   5e-18
SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha sub...    31   0.079
SPAC26H5.07c |||seven transmembrane receptor-like protein|Schizo...    25   6.8  
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po...    25   6.8  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    25   9.0  
SPBP4H10.04 |ppb1||calcineurin catalytic subunit Ppb1|Schizosacc...    25   9.0  

>SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 685

 Score = 85.4 bits (202), Expect = 5e-18
 Identities = 57/167 (34%), Positives = 82/167 (49%), Gaps = 14/167 (8%)
 Frame = +3

Query: 63  NKLRIDSIVATNASKSGHPTSCASMAEIMSVLFFHTMRYKISAPRDASADRFILSKGHAA 242
           N +R  ++  T  +KSGHP +   +A    VLF   M++  + P+  + DRFILS GHA 
Sbjct: 15  NTIRTLAVDTTAHAKSGHPGAPMGLAPAAHVLFSRIMKFNPAHPKWLNRDRFILSNGHAC 74

Query: 243 PILYAAWAEAGL-FPLDELKNLRKLDSDLEGHP---TPRLNFVDVGTGSLGQGLAVAAGM 410
            + Y      G    +++LK  R++ S   GHP    P LN ++ G G LGQG+A A G+
Sbjct: 75  VLQYIMCHLLGYKLTIEDLKQFRQVGSKTPGHPETHNPDLN-IETGAGPLGQGIASAVGL 133

Query: 411 AYVGKYFDQAPYR----------VYCLVGDXXAAEGSIWESLXFASH 521
           A +GK    A Y            +C +GD    EG   E+   A H
Sbjct: 134 A-IGKAHSAAVYNKPGFDLFSNYTFCFLGDGCLQEGVSSEACSLAGH 179


>SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha
           subunit Pda1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 31.5 bits (68), Expect = 0.079
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = +3

Query: 366 GTGSLGQGLAVAAGMAYVGKYFDQAPYRVYCLVGDXXAAEGSIWESLXFA 515
           G G +G  + + AG+ +  KY ++ P   + L GD  + +G  +E+   A
Sbjct: 180 GNGIVGAQIPLGAGIGFAQKYLEK-PTTTFALYGDGASNQGQAFEAFNMA 228


>SPAC26H5.07c |||seven transmembrane receptor-like
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 505

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 55  ISPTN*ESTVLLLQTPQSLVTRHHVRQW 138
           ISP+N ES V+L   P  L+T   +  W
Sbjct: 309 ISPSNKESLVILFAAPVFLITLFAMFLW 336


>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 472

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +3

Query: 171 MRYKISAPRDASADRFILSKGHAAPIL 251
           +R  I AP DASA  F +  GH    L
Sbjct: 295 IRTIIEAPEDASATYFAIRLGHTVAFL 321


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 325 WRATPPRDSTSWTSAPAPWAR 387
           W A     S+S TS+PAPWA+
Sbjct: 409 WAAASTSVSSS-TSSPAPWAK 428


>SPBP4H10.04 |ppb1||calcineurin catalytic subunit
           Ppb1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 554

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/40 (25%), Positives = 20/40 (50%)
 Frame = +2

Query: 101 LKVWSPDIMCVNGGDNVCSLLPHNAVQDLRATRRFRRQIY 220
           LK+W P  + +  G++ C+ L       L  T ++  ++Y
Sbjct: 165 LKIWYPKTLWLLRGNHECAHLTDYFTFKLECTHKYNIKVY 204


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,818,134
Number of Sequences: 5004
Number of extensions: 31952
Number of successful extensions: 90
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)