Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS334H03f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0237 - 1808203-1809159,1809246-1809399,1809488-1809636,180... 78 5e-15
04_03_0092 + 11079185-11079589,11081319-11081409,11081507-110816... 74 6e-14
02_05_0112 - 25931775-25932078,25932554-25932732,25934033-25935184 29 2.3
02_02_0597 - 11996350-11996483,11997511-11997604,11997877-119980... 28 4.0
11_06_0174 - 20907202-20907258,20907875-20908024,20908293-209084... 28 5.2
08_02_0238 + 14665813-14668798,14669088-14669125 28 5.2
04_04_1079 - 30663919-30665044,30665143-30665298,30665405-306655... 28 5.2
11_01_0752 - 6327269-6327764,6328571-6328839 27 6.9
09_03_0040 + 11816056-11819069,11819837-11820428 27 6.9
06_01_0940 + 7235801-7236916 27 9.1
>06_01_0237 -
1808203-1809159,1809246-1809399,1809488-1809636,
1809715-1809997,1810087-1810192,1810293-1810383,
1810779-1811270
Length = 743
Score = 77.8 bits (183), Expect = 5e-15
Identities = 56/170 (32%), Positives = 78/170 (45%), Gaps = 12/170 (7%)
Frame = +3
Query: 48 LKDIANKLRIDSIVATNASKSGHPTSCASMAEIMSVLFFHTMRYKISAPRDASADRFILS 227
L+ N +R +I A + SGHP A + +L+ MRY P + DRFILS
Sbjct: 84 LEKSVNTIRFLAIDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFILS 143
Query: 228 KGHAAPILYAAWAEAGLFPL--DELKNLRKLDSDLEGHPTP-RLNFVDVGTGSLGQGLAV 398
GH + YA AG + ++LK R+ S GHP V+V TG LGQG+A
Sbjct: 144 AGHGCMLQYALLHLAGYDAVLEEDLKQFRQWGSKTPGHPENFETPGVEVTTGPLGQGIAN 203
Query: 399 AAGMAYVGKYF---------DQAPYRVYCLVGDXXAAEGSIWESLXFASH 521
A G+A K+ + + YC++GD EG E+ A H
Sbjct: 204 AVGLALAEKHLAARFNKPDSEIVDHYTYCILGDGCQMEGISNEACSLAGH 253
>04_03_0092 +
11079185-11079589,11081319-11081409,11081507-11081612,
11081694-11081976,11082062-11082210,11083582-11083735,
11083837-11084793
Length = 714
Score = 74.1 bits (174), Expect = 6e-14
Identities = 56/172 (32%), Positives = 80/172 (46%), Gaps = 12/172 (6%)
Frame = +3
Query: 42 EQLKDIANKLRIDSIVATNASKSGHPTSCASMAEIMSVLFFHTMRYKISAPRDASADRFI 221
E ++ N +R ++ + +KSGHP A + VLF +R+ P DRFI
Sbjct: 53 EVVEQSVNTIRFLAVDSVEKAKSGHPGLPMGCAPLGHVLFDEFLRFNPKNPYWFDRDRFI 112
Query: 222 LSKGHAAPILYAAWAEAGL--FPLDELKNLRKLDSDLEGHPTP-RLNFVDVGTGSLGQGL 392
LS GH + YA AG +D+LK R+ S GHP V+V TG LGQG
Sbjct: 113 LSAGHGCMLQYALLHLAGYDSVTMDDLKAFRQWGSRTPGHPENFETPGVEVTTGPLGQGF 172
Query: 393 AVAAGMAYVGKY----FDQAPYRV-----YCLVGDXXAAEGSIWESLXFASH 521
A A G+A K+ F++ ++ Y ++GD EG E+ A H
Sbjct: 173 ANAVGLALAEKHLAARFNKPDLKIVDHHTYVILGDGCQMEGVSNEASSLAGH 224
>02_05_0112 - 25931775-25932078,25932554-25932732,25934033-25935184
Length = 544
Score = 29.1 bits (62), Expect = 2.3
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +1
Query: 331 ATPPRDSTSWTSAPAPW 381
A PPR SW +PAPW
Sbjct: 261 AFPPRRPNSWAPSPAPW 277
>02_02_0597 -
11996350-11996483,11997511-11997604,11997877-11998032,
11998580-11998639,11998733-11998951,11999038-11999377,
12001240-12001571
Length = 444
Score = 28.3 bits (60), Expect = 4.0
Identities = 16/52 (30%), Positives = 23/52 (44%)
Frame = +3
Query: 117 PTSCASMAEIMSVLFFHTMRYKISAPRDASADRFILSKGHAAPILYAAWAEA 272
PT +MA + +RYKISA D R +L H P ++ + A
Sbjct: 30 PTRGGAMAAAGDKMSIRAVRYKISASVDDRGPRPVLPLAHGDPSVFPEFRTA 81
>11_06_0174 -
20907202-20907258,20907875-20908024,20908293-20908414,
20908748-20908901,20909040-20909249
Length = 230
Score = 27.9 bits (59), Expect = 5.2
Identities = 19/46 (41%), Positives = 21/46 (45%)
Frame = +3
Query: 291 ELKNLRKLDSDLEGHPTPRLNFVDVGTGSLGQGLAVAAGMAYVGKY 428
EL N D L HP PRLN V G G+G V A VG +
Sbjct: 38 ELLNFMTYDR-LACHPGPRLNLV-AGPNGSGKGSLVLGRAASVGAF 81
>08_02_0238 + 14665813-14668798,14669088-14669125
Length = 1007
Score = 27.9 bits (59), Expect = 5.2
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +3
Query: 36 DFEQLKDIANKLRIDSI-VATNASKSGHPTSCASMAEIMSVLFFHTMRYKISAP 194
D+ + +AN R++ + +ATN + P+S S+A + L+ H +IS P
Sbjct: 445 DWSFMSSLANCTRLEVLSLATNKLQGSLPSSIGSLANTLGALWLHA--NEISGP 496
>04_04_1079 -
30663919-30665044,30665143-30665298,30665405-30665563,
30665640-30665770,30666230-30666315,30666607-30666673,
30666944-30667023,30667173-30667260,30667380-30667428,
30667516-30667608,30667725-30667808,30667986-30668044,
30668293-30668327,30668416-30668718,30669111-30669275,
30669701-30669780,30670932-30671003,30671143-30671234,
30671359-30671433,30671552-30671688,30671763-30671890,
30671942-30672033,30672473-30672808
Length = 1230
Score = 27.9 bits (59), Expect = 5.2
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Frame = -1
Query: 224 KNKSVGGSVSWR-GDLVPHCVEEENRHYLRH 135
KN GGS S D V HC+ E + + RH
Sbjct: 653 KNVKNGGSFSMNLNDSVTHCIAAEKKDFARH 683
>11_01_0752 - 6327269-6327764,6328571-6328839
Length = 254
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = -1
Query: 413 GHAGRHGEPLAQGAGADVHEVESR 342
G AGRH E G G D V SR
Sbjct: 165 GRAGRHAEAAGGGGGGDAASVASR 188
>09_03_0040 + 11816056-11819069,11819837-11820428
Length = 1201
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -3
Query: 210 RRKRLVARRSCTALCGRREQTLSPPLTHMMSGD 112
+R+ + A+RS LCGR PP T ++GD
Sbjct: 27 KRRAVSAKRSWPPLCGRFPAPPPPPPTAPVAGD 59
>06_01_0940 + 7235801-7236916
Length = 371
Score = 27.1 bits (57), Expect = 9.1
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +3
Query: 168 TMRYKISAPRDASADRFILSKGHAAPILYAAWAEA 272
T+RY I+A S DR LSK A+ +A W+ A
Sbjct: 166 TLRYAITATSQTSIDRATLSKVFAS--AFARWSAA 198
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,354,601
Number of Sequences: 37544
Number of extensions: 269132
Number of successful extensions: 1027
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 994
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1022
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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