Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS334H03f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81055-1|CAB02889.1|  618|Caenorhabditis elegans Hypothetical pr...   235   1e-62
U12965-7|AAY86205.1|  528|Caenorhabditis elegans Hypothetical pr...    31   0.50 
AF036692-6|AAB88328.1|  397|Caenorhabditis elegans Hypothetical ...    30   0.87 
U12965-9|AAA20605.3|  522|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z83104-7|CAH60780.1|  762|Caenorhabditis elegans Hypothetical pr...    27   6.2  
Z70685-2|CAA94606.2|  762|Caenorhabditis elegans Hypothetical pr...    27   6.2  
AL023835-13|CAA19497.4|  304|Caenorhabditis elegans Hypothetical...    27   6.2  

>Z81055-1|CAB02889.1|  618|Caenorhabditis elegans Hypothetical
           protein F01G10.1 protein.
          Length = 618

 Score =  235 bits (575), Expect = 1e-62
 Identities = 107/157 (68%), Positives = 128/157 (81%)
 Frame = +3

Query: 48  LKDIANKLRIDSIVATNASKSGHPTSCASMAEIMSVLFFHTMRYKISAPRDASADRFILS 227
           L+D AN++RI SI  T ASKSGHPTS  S AEIMS LFF  M+Y ++ P+ ASADRF+LS
Sbjct: 11  LEDAANRMRISSIEMTCASKSGHPTSSTSAAEIMSTLFFSEMKYDVAEPKSASADRFVLS 70

Query: 228 KGHAAPILYAAWAEAGLFPLDELKNLRKLDSDLEGHPTPRLNFVDVGTGSLGQGLAVAAG 407
           KGHA PILYAAW EAGL   +++ +LRK+DSD+EGHPTPRLNF+DV TGSLGQGL VA G
Sbjct: 71  KGHACPILYAAWEEAGLLSHEQVLSLRKIDSDIEGHPTPRLNFIDVATGSLGQGLGVATG 130

Query: 408 MAYVGKYFDQAPYRVYCLVGDXXAAEGSIWESLXFAS 518
           MAYVGKY D+A YRV+CL+GD  +AEGS+WE+  FAS
Sbjct: 131 MAYVGKYIDKASYRVFCLLGDGESAEGSVWEAAAFAS 167


>U12965-7|AAY86205.1|  528|Caenorhabditis elegans Hypothetical
           protein F23F12.13 protein.
          Length = 528

 Score = 31.1 bits (67), Expect = 0.50
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
 Frame = +3

Query: 324 LEGHPTPRLNFVDVGTGSL--GQGLAVAAGMAYVGKYFDQAPYRVYCLVG 467
           +E  PT ++  + +GT SL    G  +A  MAY+   +  APY V C +G
Sbjct: 416 VECFPT-KIRTIGIGTCSLLARTGALLAPQMAYLSDIYRPAPYAVVCSIG 464


>AF036692-6|AAB88328.1|  397|Caenorhabditis elegans Hypothetical
           protein C44B12.5 protein.
          Length = 397

 Score = 30.3 bits (65), Expect = 0.87
 Identities = 17/45 (37%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
 Frame = +1

Query: 286 WTS*RTCASWTRTWRATPPRDSTSWTSAPA---PWARGSPWRPAW 411
           W S  T  S   +W A P   STSW +APA    W       P W
Sbjct: 334 WQSENTAPS--TSWGAAPAAPSTSWGAAPAAPPTWGGAPTAAPTW 376


>U12965-9|AAA20605.3|  522|Caenorhabditis elegans Hypothetical
           protein F23F12.3 protein.
          Length = 522

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = +3

Query: 336 PTPRLNFVDVGTGSLGQ--GLAVAAGMAYVGKYFDQAPYRVYCLVG 467
           PT R+  + +GT SL    G  +A  MAY+ + +   PY + C +G
Sbjct: 432 PT-RIRTIGIGTCSLLARIGALLAPQMAYLSEIYPPIPYIIVCSIG 476


>Z83104-7|CAH60780.1|  762|Caenorhabditis elegans Hypothetical
           protein R07D5.2 protein.
          Length = 762

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -3

Query: 87  QYCRFLVCWRYLLVVQSQHFYLPSFS 10
           +Y   L+C +  L+ QS+HFYL ++S
Sbjct: 116 KYSYALICEKGNLIPQSEHFYLYAYS 141


>Z70685-2|CAA94606.2|  762|Caenorhabditis elegans Hypothetical
           protein R07D5.2 protein.
          Length = 762

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -3

Query: 87  QYCRFLVCWRYLLVVQSQHFYLPSFS 10
           +Y   L+C +  L+ QS+HFYL ++S
Sbjct: 116 KYSYALICEKGNLIPQSEHFYLYAYS 141


>AL023835-13|CAA19497.4|  304|Caenorhabditis elegans Hypothetical
           protein Y37A1B.15 protein.
          Length = 304

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = +2

Query: 56  YRQQTKNRQYCCYKRLKVWSPDIMCVNGGDNVCSL 160
           + ++T+    C +  LK+WS   + + GG+ +C+L
Sbjct: 14  FNKKTQYYSQCQFCTLKIWSNTEIVLAGGNVICNL 48


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,357,073
Number of Sequences: 27780
Number of extensions: 191991
Number of successful extensions: 581
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)