Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS334G06f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0523 - 18518158-18518442,18518786-18518899,18518994-185192... 116 9e-27
04_04_1332 + 32718584-32718706,32718892-32718960,32719069-327191... 116 9e-27
03_02_0445 - 8551912-8552047,8552729-8552896,8553785-8554068,855... 31 0.42
06_01_0503 - 3596664-3596837,3597647-3598069,3598362-3598595,359... 31 0.74
11_01_0669 - 5454116-5454153,5454569-5454770,5454865-5455029,545... 29 3.0
05_03_0384 - 13361999-13362120,13362241-13362252,13362921-133629... 28 5.2
05_03_0383 - 13352924-13353045,13353166-13353177,13353844-133539... 28 5.2
01_04_0025 - 15199036-15199493,15199633-15199681,15199782-15199931 28 5.2
11_01_0596 + 4755453-4755490,4755675-4756047,4757739-4758940,475... 27 6.9
09_04_0126 + 14874739-14875581 27 6.9
06_03_0403 - 20435349-20435358,20435750-20436204,20436744-20438315 27 6.9
02_03_0176 + 16010806-16011095,16011983-16012061,16012389-160124... 27 6.9
01_06_1169 - 35082160-35082292,35082572-35082651,35082727-350829... 27 9.1
>10_08_0523 -
18518158-18518442,18518786-18518899,18518994-18519219,
18519364-18519470,18519809-18519964,18520100-18520210
Length = 332
Score = 116 bits (280), Expect = 9e-27
Identities = 52/119 (43%), Positives = 78/119 (65%), Gaps = 2/119 (1%)
Frame = +1
Query: 148 LSRHDMLAWVNDCLQSNFAKIEELCTGAAYCQFMDMLFPGSVPMKRIKFKTNLEHEYIQN 327
+ R+++LAW+N LQ +K+EE +GA CQ MD PG+VPM ++ F E+E IQN
Sbjct: 15 VGRNEILAWINTTLQLGLSKVEEAASGAVACQLMDAAHPGAVPMHKVNFDAKTEYEMIQN 74
Query: 328 FKILQAGFKKMGVDKIVPIDKLVKGRFQDNFEFLQWFKKFFDANYGG--AAYDAVAQRE 498
+K+LQ F K+ + K + ++KL KGR DN EF+QW K++ D+ GG +Y+A +RE
Sbjct: 75 YKVLQDVFNKLKITKHIEVNKLTKGRPLDNLEFMQWMKRYCDSVNGGFMNSYNASERRE 133
>04_04_1332 +
32718584-32718706,32718892-32718960,32719069-32719155,
32719865-32719971,32720066-32720187,32720462-32720535,
32720833-32720946,32721100-32721213
Length = 269
Score = 116 bits (280), Expect = 9e-27
Identities = 51/107 (47%), Positives = 73/107 (68%)
Frame = +1
Query: 148 LSRHDMLAWVNDCLQSNFAKIEELCTGAAYCQFMDMLFPGSVPMKRIKFKTNLEHEYIQN 327
+ R ++L+W+N LQ + AK+EE +GA CQ MDM+ PG VPM ++ F E++ IQN
Sbjct: 19 VGRGEILSWINATLQLSLAKVEEAASGAVQCQLMDMVHPGVVPMHKVNFDAKTEYDMIQN 78
Query: 328 FKILQAGFKKMGVDKIVPIDKLVKGRFQDNFEFLQWFKKFFDANYGG 468
+KILQ F K+ + K + ++KLVKGR DN EFLQW K++ D+ GG
Sbjct: 79 YKILQDVFNKLRLSKNIEVNKLVKGRPLDNLEFLQWLKRYCDSVNGG 125
>03_02_0445 -
8551912-8552047,8552729-8552896,8553785-8554068,
8554143-8555386,8556901-8556967,8557059-8557150,
8557269-8557480,8558541-8558623,8559092-8559122,
8559770-8559951,8560557-8560616,8561092-8561289,
8561485-8561539,8562740-8562855,8563012-8563176,
8563310-8563483,8564134-8564333,8564778-8564882,
8565063-8565126,8566452-8566718
Length = 1300
Score = 31.5 bits (68), Expect = 0.42
Identities = 18/42 (42%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = -1
Query: 521 PRAPMGRPSRCATASYAAP-P*LASKNFLNHCKNSKLSWKRP 399
P AP PS + + A P P A N L C SKLSW P
Sbjct: 7 PEAPTPTPSPSPSPAKATPSPASADGNRLRRCVQSKLSWGPP 48
>06_01_0503 -
3596664-3596837,3597647-3598069,3598362-3598595,
3598720-3598993,3599390-3599523,3599572-3599634,
3599759-3599846,3599919-3599989,3600898-3601010,
3601836-3602004,3602580-3602671,3602819-3603295,
3603736-3604090
Length = 888
Score = 30.7 bits (66), Expect = 0.74
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -2
Query: 265 QGTACP*TGNRRHLYTTLRSSQSLTGDNHSPTLAYHAAIDF 143
QGT+C RH T LR++ TG + +L H A+D+
Sbjct: 733 QGTSCRGVNWDRHSLTDLRAAVVCTGGHRLASLLRHLALDY 773
>11_01_0669 -
5454116-5454153,5454569-5454770,5454865-5455029,
5455278-5456183
Length = 436
Score = 28.7 bits (61), Expect = 3.0
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Frame = +1
Query: 193 SNFAKIEEL-CTGAAY---CQFMDMLFPGSVPMKRIKFKTNLEHEYIQNFKILQAGF 351
SN KI E+ C G C+F+ L +P+++I K EH + F + GF
Sbjct: 377 SNHLKIVEIKCKGKEVMWVCKFLKTLGTFGIPLEKINIKLTSEHCRSECFNFVCTGF 433
>05_03_0384 -
13361999-13362120,13362241-13362252,13362921-13362981,
13363049-13363202,13364653-13364788,13365020-13365290,
13365654-13365962
Length = 354
Score = 27.9 bits (59), Expect = 5.2
Identities = 13/43 (30%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = -3
Query: 465 SIVGVKEFLEP-LQKLKIILETTLHQFVNGYYLVHTHLFKTSL 340
S++G + P + +LK+ ++ TLH+ + LVH LF+ ++
Sbjct: 151 SLIGTMSGIIPYMNQLKVFVDVTLHRMMLMKLLVHHDLFELAV 193
>05_03_0383 -
13352924-13353045,13353166-13353177,13353844-13353904,
13353972-13354125,13355576-13355711,13355943-13356138
Length = 226
Score = 27.9 bits (59), Expect = 5.2
Identities = 13/43 (30%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = -3
Query: 465 SIVGVKEFLEP-LQKLKIILETTLHQFVNGYYLVHTHLFKTSL 340
S++G + P + +LK+ ++ TLH+ + LVH LF+ ++
Sbjct: 23 SLIGTMSGIIPYMNQLKVFVDVTLHRMMLMKLLVHHDLFELAV 65
>01_04_0025 - 15199036-15199493,15199633-15199681,15199782-15199931
Length = 218
Score = 27.9 bits (59), Expect = 5.2
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = -3
Query: 438 EPLQKLKIILETTLHQFVNGYYLVHTHLFKTSL*YFKVLYIFMFQICLK-FDSF 280
E L+KLK +LET + YL L L +F + FM C FD++
Sbjct: 138 ESLEKLKKVLETYEARLSGSRYLAGDFLSFADLNHFPFTFYFMATPCASLFDAY 191
>11_01_0596 +
4755453-4755490,4755675-4756047,4757739-4758940,
4759026-4759392
Length = 659
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +1
Query: 427 LQWFKKFFDANYGGAAYDAVAQR 495
++W+K FDAN G YDA QR
Sbjct: 437 IEWYKALFDANTG--YYDAFKQR 457
>09_04_0126 + 14874739-14875581
Length = 280
Score = 27.5 bits (58), Expect = 6.9
Identities = 17/46 (36%), Positives = 22/46 (47%)
Frame = +1
Query: 181 DCLQSNFAKIEELCTGAAYCQFMDMLFPGSVPMKRIKFKTNLEHEY 318
D L++ FA I E+ Y MD FPG V FK+N + Y
Sbjct: 20 DNLEAEFAVIREIVDDFPYVA-MDTEFPGVVCRPLGTFKSNADFNY 64
>06_03_0403 - 20435349-20435358,20435750-20436204,20436744-20438315
Length = 678
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/26 (50%), Positives = 13/26 (50%)
Frame = +2
Query: 191 SQTLRRSKSCVQVPPIASSWTCCSLA 268
S T RS S P SSWTC S A
Sbjct: 632 SATASRSASPTSARPATSSWTCTSAA 657
>02_03_0176 +
16010806-16011095,16011983-16012061,16012389-16012464,
16012541-16012630,16012878-16013031,16013172-16013181,
16013240-16013407,16014087-16014485,16014580-16014990
Length = 558
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = +2
Query: 188 SSQTLRRSKSCVQVPPIASSWTCCS 262
S + R S SC PPI WT CS
Sbjct: 166 SRKRKRGSNSCSSDPPINLEWTLCS 190
>01_06_1169 -
35082160-35082292,35082572-35082651,35082727-35082939,
35083243-35083323,35083381-35083492,35083697-35083786,
35083986-35084176,35084683-35084762,35085266-35085347,
35085506-35085590,35086261-35086379
Length = 421
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = -1
Query: 260 NSMSMNWQ*AAPVHNSSIFAKFDWRQSFTHASISC 156
N + +N+ + +HN+S+ F W +F+H SC
Sbjct: 156 NILGINFSRTSYMHNASLLLYFPW--AFSHRQCSC 188
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,018,764
Number of Sequences: 37544
Number of extensions: 316484
Number of successful extensions: 811
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 811
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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