Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS334G01f
(403 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC800.09 |sum2||G2/M transition checkpoint protein Sum2|Schizo... 27 0.82
SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2 |... 27 1.4
SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces... 26 1.9
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 25 4.4
SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|ch... 25 4.4
SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|c... 25 4.4
SPAC8C9.07 |||rRNA processing protein Fyv7 |Schizosaccharomyces ... 25 4.4
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi... 25 5.8
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 25 5.8
SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr 1||... 25 5.8
>SPBC800.09 |sum2||G2/M transition checkpoint protein
Sum2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 27.5 bits (58), Expect = 0.82
Identities = 22/97 (22%), Positives = 39/97 (40%)
Frame = +1
Query: 52 PLRDISPALQAFRNFLLGRKHTNALRFEPLVSPRTQPPPEIPDGPSHKHAHNYYYTRDAR 231
P ++I P+ F + LR E + + PP + P+ P+ +++ Y +
Sbjct: 50 PSQEIPPSDNVFDYIVFRGSDVKDLRIEEPATTPSAPPVQPPNDPAIIGSNSGQYNWNQA 109
Query: 232 REVAPPIDVTKELLSASSDKGAPKQAANVRPTPGHLY 342
+ PP V + GAP Q A P ++Y
Sbjct: 110 QTAQPPQPV------QPNPYGAPYQQAPPAGAPYYMY 140
>SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 499
Score = 26.6 bits (56), Expect = 1.4
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +1
Query: 28 FKMVKAKVPLRDISPA-LQAFRNFLLGRKHTNALRFEPLVSPRTQPPPEI 174
F V+ + R+I+ L F G+ + LRF+P +P T+P E+
Sbjct: 370 FHQVEGVICDRNITLGDLIGFLEVFFGKMNVKNLRFKPAYNPYTEPSLEV 419
>SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 26.2 bits (55), Expect = 1.9
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 133 EPLVSPRTQPPPEIPDGPSHK 195
E V+PR PPP++P P HK
Sbjct: 149 EGFVTPRISPPPDVPLRP-HK 168
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 25.0 bits (52), Expect = 4.4
Identities = 12/46 (26%), Positives = 20/46 (43%)
Frame = +1
Query: 190 HKHAHNYYYTRDARREVAPPIDVTKELLSASSDKGAPKQAANVRPT 327
H H+H+ + R+ +E + K + D+G P Q A T
Sbjct: 724 HGHSHSKSHDREKEKEKKKDREHRKHRETEEEDEGPPPQPARPEST 769
>SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 589
Score = 25.0 bits (52), Expect = 4.4
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = -3
Query: 206 LWACLCEGPSGISGGG 159
LW LC GI GGG
Sbjct: 179 LWLVLCRAVQGIGGGG 194
>SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 589
Score = 25.0 bits (52), Expect = 4.4
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = -3
Query: 206 LWACLCEGPSGISGGG 159
LW LC GI GGG
Sbjct: 179 LWLVLCRAVQGIGGGG 194
>SPAC8C9.07 |||rRNA processing protein Fyv7 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 144
Score = 25.0 bits (52), Expect = 4.4
Identities = 17/43 (39%), Positives = 20/43 (46%)
Frame = +1
Query: 274 SASSDKGAPKQAANVRPTPGHLYAWDKHYE*TCDPHLKKKKKK 402
S+SSD+G K+ R P H Y K D LK K KK
Sbjct: 6 SSSSDQGTKKKGFKFRQLPEHAYQ-GKAKRIKQDLILKAKTKK 47
>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 984
Score = 24.6 bits (51), Expect = 5.8
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +1
Query: 202 HNYYYTRDARREVAPPIDVTKEL-LSASSDK 291
HNY++ V + +TKEL LS S D+
Sbjct: 903 HNYFFAEAHASSVTGVLSITKELLLSVSIDQ 933
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 24.6 bits (51), Expect = 5.8
Identities = 12/34 (35%), Positives = 15/34 (44%)
Frame = +1
Query: 160 PPPEIPDGPSHKHAHNYYYTRDARREVAPPIDVT 261
PPP P P+ + YY + E P ID T
Sbjct: 775 PPPPPPPPPAVSAGGSRYYAPAPQAEPEPKIDET 808
>SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 753
Score = 24.6 bits (51), Expect = 5.8
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +2
Query: 158 SLLQKSQTDPRTSMPTTTITQETLDAKLHLQ 250
SLL K+ ++ S PTTT T+ DA+L+ Q
Sbjct: 528 SLLYKATSNK--SRPTTTSTELKTDARLNFQ 556
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,683,080
Number of Sequences: 5004
Number of extensions: 33618
Number of successful extensions: 123
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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