Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS334F12f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo... 31 0.14
SPAPB1E7.11c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 26 3.0
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce... 26 3.9
SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|c... 26 3.9
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 5.2
SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom... 25 5.2
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 25 6.8
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|... 25 6.8
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo... 25 6.8
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos... 25 6.8
SPAC1486.01 |||manganese superoxide dismutase |Schizosaccharomyc... 25 9.0
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 9.0
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 25 9.0
SPAC16E8.10c |||mitochondrial ribosomal protein subunit S7|Schiz... 25 9.0
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy... 25 9.0
>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2244
Score = 30.7 bits (66), Expect = 0.14
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -3
Query: 501 SLPFSPDSTPSPQDTAEAIDILTSHITSTLDRSSKQ 394
S+ F P+STP P+DT D+ + + D S Q
Sbjct: 418 SVQFHPESTPGPRDTEFLFDVFIDVVKRSADAKSLQ 453
>SPAPB1E7.11c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 319
Score = 26.2 bits (55), Expect = 3.0
Identities = 26/120 (21%), Positives = 45/120 (37%), Gaps = 1/120 (0%)
Frame = -3
Query: 486 PDSTPSPQDTAEAIDILTSHITSTLDRSSKQVVAEDFLHRFKLSDDIRELLRAKNASIRA 307
P + P P A + + I+S EDF++ + +D+ + A +
Sbjct: 90 PPAAPIPMKKASNTEPVEKEISSFFSEEGATKENEDFINEKEEEEDLSFSINAAHTFSNI 149
Query: 306 YDRYPTAENRIRMRALQRDVKSRIAKVRDARW-SDFLEGLAPSQRSYYRLARTLKSDTVV 130
Y N + A + + +I + R+ L PS S RL +TLK +V
Sbjct: 150 GTWYLARANEV---AEFKHQQKKIVAINKGRFPKSLLLQYVPSNISSERLFKTLKRHGLV 206
>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1418
Score = 25.8 bits (54), Expect = 3.9
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = +1
Query: 13 PIHCKPSAIPIEAPVTCGRAH 75
P HC S +P+E CG H
Sbjct: 1320 PAHCPLSIVPLEICFLCGTPH 1340
>SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 465
Score = 25.8 bits (54), Expect = 3.9
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Frame = +2
Query: 254 RCRAR-IRIRFSAVGYLS*ARIEAFLALRSSLISSDNLKR*RKSSATTCFDDLSNV-EVM 427
RC+ + + SA+ YLS E L LISS N ++ SAT D+ V E+
Sbjct: 368 RCQEEDVDMEPSALDYLSTIGQETSLRYALLLISSSNQVALKRKSATIEESDIRRVYELF 427
Query: 428 CDVKMSM 448
D K S+
Sbjct: 428 LDQKRSV 434
>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 262
Score = 25.4 bits (53), Expect = 5.2
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = -2
Query: 157 SYSQIGYGSNYAPPRRPLRPTHG 89
SYSQ Y PP+ P P+ G
Sbjct: 96 SYSQPSYSQPSQPPKEPALPSRG 118
>SPCC132.01c ||SPCC1322.17c|DUF814 family
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1021
Score = 25.4 bits (53), Expect = 5.2
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = -3
Query: 354 DDIRELLRAKNASIRAYDRYPTAENRIRMRALQRDVKSRIAKVRDAR 214
D+ + A+ RA+DR TAE R+ + + D ++ ++DA+
Sbjct: 342 DEFFSSIEAQKLKKRAHDRLATAER--RLESAKEDQARKLQSLQDAQ 386
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 25.0 bits (52), Expect = 6.8
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = -3
Query: 456 AEAIDILTSHITSTLDRSSKQVVAEDFLH 370
+E + L +H+ + + S KQ + EDF+H
Sbjct: 1601 SEWVSKLDTHVRNCIKFSHKQNLEEDFIH 1629
>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 736
Score = 25.0 bits (52), Expect = 6.8
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = -3
Query: 375 LHRFKLSDDIRELLRAKNASIRAYDRYPTAENRIRMRALQRDVKSRIA 232
LH KLS I ++ + + YD YP A +AL+R V +++
Sbjct: 511 LH-LKLSKGIMDI-KVLTHQLMLYDLYPPAHQTYLWKALERLVNEKVS 556
>SPCC1739.11c |cdc11||SIN component scaffold protein
Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1045
Score = 25.0 bits (52), Expect = 6.8
Identities = 15/32 (46%), Positives = 16/32 (50%)
Frame = -3
Query: 375 LHRFKLSDDIRELLRAKNASIRAYDRYPTAEN 280
L+RF DIR L R N S R D P A N
Sbjct: 809 LNRFNRPPDIRRLKRLVNFSFRTQD--PEASN 838
>SPBC17D11.05 |tif32||translation initiation factor
eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 932
Score = 25.0 bits (52), Expect = 6.8
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -2
Query: 154 YSQIGYGSNYAPPRRPLRPTHG 89
YS+ GY PPR L P+ G
Sbjct: 898 YSRGGYSRGSVPPRETLAPSKG 919
>SPAC1486.01 |||manganese superoxide dismutase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 218
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/50 (22%), Positives = 25/50 (50%)
Frame = -3
Query: 258 QRDVKSRIAKVRDARWSDFLEGLAPSQRSYYRLARTLKSDTVVTMPPLVG 109
Q+++ + +A ++ + W+ L + R+ T DT+V P++G
Sbjct: 134 QKEMNAALASIQGSGWA----WLIVDKDGSLRITTTANQDTIVKSKPIIG 179
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 24.6 bits (51), Expect = 9.0
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = -3
Query: 501 SLPFSPDSTPSPQDTAEAIDILTSHITSTLDRSSKQVVAEDFLH 370
+L S S+ P ++ L+SH +S+ +SS V+ F H
Sbjct: 382 TLTSSSSSSSRPASSSSHSSSLSSHKSSSSSKSSSAPVSSAFYH 425
>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 565
Score = 24.6 bits (51), Expect = 9.0
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +2
Query: 350 SSDNLKR*RKSSATTCFDDLSNVEVMCDVKMSMASAVS*GDGVESGLNG-SDQIQP 514
SSD + +KSS + F SNV +KM + + G G+ + NG + IQP
Sbjct: 471 SSDTIVEAKKSSQGSSFHSTSNV----SMKMLNSMGWNKGSGLGTNENGIKEAIQP 522
>SPAC16E8.10c |||mitochondrial ribosomal protein subunit
S7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 259
Score = 24.6 bits (51), Expect = 9.0
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = +2
Query: 182 EGASPSKKSDHLASRTLAMRDFTSRC 259
+ +SP + SD + +A+R TS C
Sbjct: 212 KSSSPKRLSDRIVKEIIAIRSKTSNC 237
>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 991
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +1
Query: 67 RAHRPLDRRESA*GAYEGGHSYYRIR 144
RA R R + +Y GGH Y +R
Sbjct: 871 RAERSFSSRRNNGNSYRGGHQSYGVR 896
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,079,943
Number of Sequences: 5004
Number of extensions: 41238
Number of successful extensions: 123
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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