Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS334F12f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0313 - 2461487-2461861,2461929-2462513,2462819-2464154,246... 29 2.3
01_06_1154 - 34955235-34955827,34955912-34956045,34956142-349563... 29 3.0
11_01_0448 - 3469398-3469676,3470015-3470284,3470386-3470476,347... 28 4.0
06_03_1488 + 30484904-30485134,30485239-30487159,30487255-304876... 28 5.2
06_01_0609 + 4404287-4405023,4405496-4405631,4405724-4405876,440... 27 6.9
09_06_0373 + 22632638-22633195,22633279-22633485,22633583-226337... 27 9.1
06_01_0474 - 3362734-3362827,3363179-3363366,3363458-3363700,336... 27 9.1
05_07_0253 + 28692309-28692643,28693530-28693569,28693709-286937... 27 9.1
02_01_0444 + 3212646-3212686,3213093-3213225,3213467-3213570,321... 27 9.1
>05_01_0313 -
2461487-2461861,2461929-2462513,2462819-2464154,
2464231-2464338,2464421-2464743
Length = 908
Score = 29.1 bits (62), Expect = 2.3
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -1
Query: 380 TSFTASNCPTILGNSLELRTPRYAPTTGILPRKIVFECVPYN 255
T + AS C +G +LE +P T +LPR FE +P++
Sbjct: 341 TDYLASECA--IGINLERTSPPEETTYVLLPRAAYFEFIPFD 380
>01_06_1154 -
34955235-34955827,34955912-34956045,34956142-34956389,
34956431-34956901
Length = 481
Score = 28.7 bits (61), Expect = 3.0
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = -3
Query: 276 IRMRALQRDVKSRIAKVRDARWSDFLEGLAPSQRSYYRLARTLK 145
+R++AL + +SR+A+ + + DF+ L P R Y R+ +K
Sbjct: 182 LRLKALNGE-RSRLAQSFEYNYGDFIPILRPFLRGYLRICEEVK 224
>11_01_0448 -
3469398-3469676,3470015-3470284,3470386-3470476,
3470581-3470690,3470867-3471136,3471768-3471914
Length = 388
Score = 28.3 bits (60), Expect = 4.0
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = -3
Query: 237 IAKVRDARWSDFLEGLAPSQRSYYRL-ARTLKSDTVVTMPPLVGPS 103
+A + W L+GLA + +YY+ AR K TVV++P GPS
Sbjct: 144 LAGSNNESWCQGLDGLASREAAYYQQGARFAKWRTVVSIPN--GPS 187
>06_03_1488 +
30484904-30485134,30485239-30487159,30487255-30487691,
30487777-30487983
Length = 931
Score = 27.9 bits (59), Expect = 5.2
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -1
Query: 383 RTSFTASNCPTILGNSLELRTPRY 312
RT FTAS CPTI + + RY
Sbjct: 220 RTVFTASGCPTITSSRHRMEEGRY 243
>06_01_0609 + 4404287-4405023,4405496-4405631,4405724-4405876,
4405985-4406128,4406224-4406375,4406453-4406552,
4406653-4406775,4406876-4407037,4407190-4407247,
4407324-4407502,4408294-4408402,4408567-4408637,
4408891-4408986,4409727-4409803,4410983-4411066,
4411473-4411607,4411744-4411819,4413072-4413167,
4413580-4413671,4413745-4413868,4413966-4414052
Length = 996
Score = 27.5 bits (58), Expect = 6.9
Identities = 21/74 (28%), Positives = 31/74 (41%)
Frame = -3
Query: 273 RMRALQRDVKSRIAKVRDARWSDFLEGLAPSQRSYYRLARTLKSDTVVTMPPLVGPSGRL 94
R LQ++V+ R D +E + ++ LA +LK+D V PP GPS
Sbjct: 857 RRMPLQQNVELAAHNARIYGVDDMIEFVVAD---FFHLAPSLKADLVFLSPPWGGPSYSQ 913
Query: 93 TAIEWTMSTSARDG 52
+ RDG
Sbjct: 914 AQVYSLDMLKPRDG 927
>09_06_0373 +
22632638-22633195,22633279-22633485,22633583-22633798,
22635375-22635441,22635531-22635677,22635811-22635906,
22636530-22636642,22636732-22636868,22637096-22637336
Length = 593
Score = 27.1 bits (57), Expect = 9.1
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = -3
Query: 456 AEAIDILTSHITSTLDRSSKQVVAEDFLHRFKLSDDIRELLRAKNASI 313
A+ + LT+HI + LD S K + D+ + +I LRA + I
Sbjct: 164 ADTVPRLTTHIRTLLDDSKKTLQEADYKEWKHVVQEIARFLRADSPFI 211
>06_01_0474 -
3362734-3362827,3363179-3363366,3363458-3363700,
3363820-3364098,3364189-3364386,3364475-3365110,
3365209-3365463,3365579-3365685,3365770-3369566,
3369677-3370166,3370918-3371308,3371481-3371573,
3371687-3371810,3372544-3372791
Length = 2380
Score = 27.1 bits (57), Expect = 9.1
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = -3
Query: 477 TPSPQDTAEAIDILTSHITST--LDRSSKQVVAEDFLHRFKLSDDIRELLR 331
T P A D L + ITST +DR ++ ED F+L D + LL+
Sbjct: 353 TEDPDLPAFYYDPLINPITSTNKVDRRERRTTEEDEDEDFRLPDGVEPLLK 403
>05_07_0253 +
28692309-28692643,28693530-28693569,28693709-28693777,
28694219-28694273,28694796-28694871,28695565-28695702,
28697361-28697388,28698177-28698413,28698516-28698665,
28698726-28698734
Length = 378
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = -3
Query: 192 LAPSQRSYYRLARTLKSDTVVTMPPLVGPS-GRLTAIEW 79
+A + RS +A VT+ P +GP GR++A+EW
Sbjct: 50 VAVAARSVLAVAPVAGGGGRVTVRPALGPDDGRISAVEW 88
>02_01_0444 +
3212646-3212686,3213093-3213225,3213467-3213570,
3214360-3214504,3214592-3214732,3214835-3216298
Length = 675
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = -2
Query: 100 PTHGDRVDDEHVRT*RVP 47
PTHGDR DDE T + P
Sbjct: 446 PTHGDRYDDEAKMTSQTP 463
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,629,385
Number of Sequences: 37544
Number of extensions: 313918
Number of successful extensions: 835
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 835
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -