Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS334F12f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U08022-1|AAA17722.1| 515|Caenorhabditis elegans STE12 transcrip... 31 0.50
AL110501-6|CAH19094.1| 466|Caenorhabditis elegans Hypothetical ... 31 0.50
AL110501-5|CAB54505.1| 552|Caenorhabditis elegans Hypothetical ... 31 0.50
AC006620-3|AAF39779.2| 579|Caenorhabditis elegans Hypothetical ... 31 0.50
AC024741-1|AAK68394.3| 789|Caenorhabditis elegans Hypothetical ... 29 1.5
U41990-2|AAA83339.2| 1963|Caenorhabditis elegans Non-muscle myos... 27 6.2
AC024747-1|AAO21404.1| 203|Caenorhabditis elegans Ubiquitin con... 27 6.2
U11279-2|AAW88400.1| 714|Caenorhabditis elegans Sensory axon gu... 27 8.1
U11279-1|AAW88399.1| 2886|Caenorhabditis elegans Sensory axon gu... 27 8.1
AY763581-1|AAV41897.1| 2914|Caenorhabditis elegans SAX-2 protein. 27 8.1
>U08022-1|AAA17722.1| 515|Caenorhabditis elegans STE12
transcriptional activator protein.
Length = 515
Score = 31.1 bits (67), Expect = 0.50
Identities = 22/68 (32%), Positives = 26/68 (38%)
Frame = -3
Query: 480 STPSPQDTAEAIDILTSHITSTLDRSSKQVVAEDFLHRFKLSDDIRELLRAKNASIRAYD 301
STP P+D AE D + I S D A L+ S L K A I D
Sbjct: 384 STPMPEDAAEVSDTILRDIFSAFDEQKNSEAANKELNSATPSTTEEPELEGKGA-IVIED 442
Query: 300 RYPTAENR 277
+P E R
Sbjct: 443 SFPRIEER 450
>AL110501-6|CAH19094.1| 466|Caenorhabditis elegans Hypothetical
protein Y79H2A.1b protein.
Length = 466
Score = 31.1 bits (67), Expect = 0.50
Identities = 22/68 (32%), Positives = 26/68 (38%)
Frame = -3
Query: 480 STPSPQDTAEAIDILTSHITSTLDRSSKQVVAEDFLHRFKLSDDIRELLRAKNASIRAYD 301
STP P+D AE D + I S D A L+ S L K A I D
Sbjct: 335 STPMPEDAAEVSDTILRDIFSAFDEQKNSEAANKELNSATPSTTEEPELEGKGA-IVIED 393
Query: 300 RYPTAENR 277
+P E R
Sbjct: 394 SFPRIEER 401
>AL110501-5|CAB54505.1| 552|Caenorhabditis elegans Hypothetical
protein Y79H2A.1a protein.
Length = 552
Score = 31.1 bits (67), Expect = 0.50
Identities = 22/68 (32%), Positives = 26/68 (38%)
Frame = -3
Query: 480 STPSPQDTAEAIDILTSHITSTLDRSSKQVVAEDFLHRFKLSDDIRELLRAKNASIRAYD 301
STP P+D AE D + I S D A L+ S L K A I D
Sbjct: 421 STPMPEDAAEVSDTILRDIFSAFDEQKNSEAANKELNSATPSTTEEPELEGKGA-IVIED 479
Query: 300 RYPTAENR 277
+P E R
Sbjct: 480 SFPRIEER 487
>AC006620-3|AAF39779.2| 579|Caenorhabditis elegans Hypothetical
protein C51G7.4 protein.
Length = 579
Score = 31.1 bits (67), Expect = 0.50
Identities = 22/68 (32%), Positives = 26/68 (38%)
Frame = -3
Query: 480 STPSPQDTAEAIDILTSHITSTLDRSSKQVVAEDFLHRFKLSDDIRELLRAKNASIRAYD 301
STP P+D AE D + I S D A L+ S L K A I D
Sbjct: 448 STPMPEDAAEVSDTILRDIFSAFDEQKNSEAANKELNSATPSTTEEPELEGKGA-IVIED 506
Query: 300 RYPTAENR 277
+P E R
Sbjct: 507 SFPRIEER 514
>AC024741-1|AAK68394.3| 789|Caenorhabditis elegans Hypothetical
protein R05G9R.1 protein.
Length = 789
Score = 29.5 bits (63), Expect = 1.5
Identities = 15/51 (29%), Positives = 22/51 (43%)
Frame = -2
Query: 193 TRALPKVLLPLSSYSQIGYGSNYAPPRRPLRPTHGDRVDDEHVRT*RVPLS 41
T P +P++ Y Q+ S+ P RP+ D +RT PLS
Sbjct: 506 TSTTPMFPIPIARYEQVNSSSSMWPMDGQRRPSTSDHTTTPQLRTTAAPLS 556
>U41990-2|AAA83339.2| 1963|Caenorhabditis elegans Non-muscle myosin
protein 1 protein.
Length = 1963
Score = 27.5 bits (58), Expect = 6.2
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +2
Query: 242 DFTSRCRARIRIRFSAVGYLS*ARIEAFLALRSSLI 349
D +SR IRI F GY+S A IE +L +S ++
Sbjct: 244 DNSSRFGKFIRINFDMSGYISGANIEFYLLEKSRVL 279
>AC024747-1|AAO21404.1| 203|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein26 protein.
Length = 203
Score = 27.5 bits (58), Expect = 6.2
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +2
Query: 14 RYIANPVPFR*RHPSRADVLIVHSIAVSRPEGPTRGGI 127
R + PVPF P ++L I + P+ P GGI
Sbjct: 19 RLLKEPVPFMKAAPLETNILEWRYIIIGAPKTPYEGGI 56
>U11279-2|AAW88400.1| 714|Caenorhabditis elegans Sensory axon
guidance protein 2,isoform b protein.
Length = 714
Score = 27.1 bits (57), Expect = 8.1
Identities = 20/74 (27%), Positives = 32/74 (43%)
Frame = -3
Query: 450 AIDILTSHITSTLDRSSKQVVAEDFLHRFKLSDDIRELLRAKNASIRAYDRYPTAENRIR 271
A D L S +T+ + S Q+ L S D + NAS+ A + YP +R
Sbjct: 304 ADDDLRSRLTNNIVSISSQMTEHRHLEEENTSVDGSSVCAYSNASMLASEYYPNRTRSLR 363
Query: 270 MRALQRDVKSRIAK 229
++ + SRI +
Sbjct: 364 IQC-SHHLDSRIER 376
>U11279-1|AAW88399.1| 2886|Caenorhabditis elegans Sensory axon
guidance protein 2,isoform a protein.
Length = 2886
Score = 27.1 bits (57), Expect = 8.1
Identities = 20/74 (27%), Positives = 32/74 (43%)
Frame = -3
Query: 450 AIDILTSHITSTLDRSSKQVVAEDFLHRFKLSDDIRELLRAKNASIRAYDRYPTAENRIR 271
A D L S +T+ + S Q+ L S D + NAS+ A + YP +R
Sbjct: 2476 ADDDLRSRLTNNIVSISSQMTEHRHLEEENTSVDGSSVCAYSNASMLASEYYPNRTRSLR 2535
Query: 270 MRALQRDVKSRIAK 229
++ + SRI +
Sbjct: 2536 IQC-SHHLDSRIER 2548
>AY763581-1|AAV41897.1| 2914|Caenorhabditis elegans SAX-2 protein.
Length = 2914
Score = 27.1 bits (57), Expect = 8.1
Identities = 20/74 (27%), Positives = 32/74 (43%)
Frame = -3
Query: 450 AIDILTSHITSTLDRSSKQVVAEDFLHRFKLSDDIRELLRAKNASIRAYDRYPTAENRIR 271
A D L S +T+ + S Q+ L S D + NAS+ A + YP +R
Sbjct: 2504 ADDDLRSRLTNNIVSISSQMTEHRHLEEENTSVDGSSVCAYSNASMLASEYYPNRTRSLR 2563
Query: 270 MRALQRDVKSRIAK 229
++ + SRI +
Sbjct: 2564 IQC-SHHLDSRIER 2576
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,742,880
Number of Sequences: 27780
Number of extensions: 241388
Number of successful extensions: 594
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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