Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS334F11f
         (498 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0448 - 25314042-25314183,25314271-25314321,25314437-253150...    28   3.6  
12_01_0028 + 242016-242467,242547-242918,243027-243182,245007-24...    27   6.3  
09_06_0292 + 22075647-22075691,22077394-22077507,22077602-220778...    27   8.4  

>04_04_0448 -
           25314042-25314183,25314271-25314321,25314437-25315033,
           25315151-25315353
          Length = 330

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -3

Query: 460 PPPPSVDRSLLSIVMRPPV 404
           PPPPS  RSL S+ +R P+
Sbjct: 3   PPPPSPPRSLTSVSLRTPL 21


>12_01_0028 +
           242016-242467,242547-242918,243027-243182,245007-245089,
           245159-245222,245704-246001,246616-246726,247059-247100
          Length = 525

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = -3

Query: 460 PPPPSVDRSLLSIVMRPPVXFFV 392
           PPP S  RSLLS + R PV   V
Sbjct: 25  PPPASSSRSLLSALRRSPVTTLV 47


>09_06_0292 +
           22075647-22075691,22077394-22077507,22077602-22077841,
           22077926-22078003,22078094-22078162,22078420-22078545,
           22079108-22079188,22079272-22079460,22079597-22080434,
           22082290-22082411,22082482-22082701,22082910-22083055,
           22083260-22083566,22083886-22084136,22084294-22084533,
           22084930-22085238
          Length = 1124

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 13/60 (21%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
 Frame = -3

Query: 496 SSHTRXHLQ*TYPPPPSVD-RSLLSIVMRPPVXFFVIXSHLYSXSNXHIID-XKSFILWN 323
           +SH++ H     PPPP      ++  ++RPPV    I + ++  +  ++ +  ++ ++W+
Sbjct: 455 ASHSQFHAPPHQPPPPERPVPGIVPGIVRPPVPTTQITNPMFQSATSYVRENRRASVVWD 514


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,543,448
Number of Sequences: 37544
Number of extensions: 145617
Number of successful extensions: 263
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 262
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)