Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS334F11f
(498 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68493-8|CAA92795.1| 336|Caenorhabditis elegans Hypothetical pr... 29 1.4
Z83104-7|CAH60780.1| 762|Caenorhabditis elegans Hypothetical pr... 27 7.6
Z70685-2|CAA94606.2| 762|Caenorhabditis elegans Hypothetical pr... 27 7.6
U70858-9|AAB09181.2| 300|Caenorhabditis elegans Serpentine rece... 27 7.6
U00035-2|AAA50644.2| 413|Caenorhabditis elegans Hypothetical pr... 27 7.6
AL032627-7|CAD56256.1| 306|Caenorhabditis elegans Hypothetical ... 27 7.6
AL032627-6|CAD56255.1| 331|Caenorhabditis elegans Hypothetical ... 27 7.6
AL032627-5|CAD45607.2| 314|Caenorhabditis elegans Hypothetical ... 27 7.6
AL032627-3|CAB54381.2| 325|Caenorhabditis elegans Hypothetical ... 27 7.6
AB081596-1|BAC19843.1| 325|Caenorhabditis elegans cyclic AMP-re... 27 7.6
AB081595-1|BAC19842.1| 306|Caenorhabditis elegans cyclic AMP-re... 27 7.6
Z83114-5|CAB05550.2| 485|Caenorhabditis elegans Hypothetical pr... 27 10.0
AF348167-1|AAK37545.1| 485|Caenorhabditis elegans Pelle IRAK-li... 27 10.0
>Z68493-8|CAA92795.1| 336|Caenorhabditis elegans Hypothetical
protein C33A12.11 protein.
Length = 336
Score = 29.5 bits (63), Expect = 1.4
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = -2
Query: 119 ISMYR*TELFCFTVRIDNRMAFMINQNNNDKFCLFFF 9
+ Y+ +E+ ++ID + F+I+ + FCLFFF
Sbjct: 50 LKFYKNSEVASIAMKIDRNVLFVISLSQLICFCLFFF 86
>Z83104-7|CAH60780.1| 762|Caenorhabditis elegans Hypothetical
protein R07D5.2 protein.
Length = 762
Score = 27.1 bits (57), Expect = 7.6
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = +1
Query: 340 IYXQLYXYCYXNISGYXLQKRXQAGASRCSAMSDRLKEEEDMFIADVXECAT 495
+Y LY CY ++KR RC+ +S L + +D F+ C+T
Sbjct: 165 VYADLYGRCYVP----HVEKRQAKIKERCNGISAPLLKFQDFFLRFSRNCST 212
>Z70685-2|CAA94606.2| 762|Caenorhabditis elegans Hypothetical
protein R07D5.2 protein.
Length = 762
Score = 27.1 bits (57), Expect = 7.6
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = +1
Query: 340 IYXQLYXYCYXNISGYXLQKRXQAGASRCSAMSDRLKEEEDMFIADVXECAT 495
+Y LY CY ++KR RC+ +S L + +D F+ C+T
Sbjct: 165 VYADLYGRCYVP----HVEKRQAKIKERCNGISAPLLKFQDFFLRFSRNCST 212
>U70858-9|AAB09181.2| 300|Caenorhabditis elegans Serpentine
receptor, class x protein36 protein.
Length = 300
Score = 27.1 bits (57), Expect = 7.6
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = -1
Query: 123 LYFNVQINRTLLFYCT 76
LYFN +I R+LL YC+
Sbjct: 262 LYFNTEIQRSLLKYCS 277
>U00035-2|AAA50644.2| 413|Caenorhabditis elegans Hypothetical
protein R01H2.2 protein.
Length = 413
Score = 27.1 bits (57), Expect = 7.6
Identities = 16/33 (48%), Positives = 18/33 (54%)
Frame = -1
Query: 381 TYILVAIXI*LXVNLSFYGTQVYN*RVKEINKT 283
TYI V I I L V L+F +V N R NKT
Sbjct: 7 TYIFVIINIGLVVGLNFTDAEVANLRASCKNKT 39
>AL032627-7|CAD56256.1| 306|Caenorhabditis elegans Hypothetical
protein Y41C4A.4e protein.
Length = 306
Score = 27.1 bits (57), Expect = 7.6
Identities = 12/17 (70%), Positives = 12/17 (70%)
Frame = -3
Query: 457 PPPSVDRSLLSIVMRPP 407
PP SVD S L VMRPP
Sbjct: 52 PPSSVDASPLQSVMRPP 68
>AL032627-6|CAD56255.1| 331|Caenorhabditis elegans Hypothetical
protein Y41C4A.4d protein.
Length = 331
Score = 27.1 bits (57), Expect = 7.6
Identities = 12/17 (70%), Positives = 12/17 (70%)
Frame = -3
Query: 457 PPPSVDRSLLSIVMRPP 407
PP SVD S L VMRPP
Sbjct: 77 PPSSVDASPLQSVMRPP 93
>AL032627-5|CAD45607.2| 314|Caenorhabditis elegans Hypothetical
protein Y41C4A.4c protein.
Length = 314
Score = 27.1 bits (57), Expect = 7.6
Identities = 12/17 (70%), Positives = 12/17 (70%)
Frame = -3
Query: 457 PPPSVDRSLLSIVMRPP 407
PP SVD S L VMRPP
Sbjct: 60 PPSSVDASPLQSVMRPP 76
>AL032627-3|CAB54381.2| 325|Caenorhabditis elegans Hypothetical
protein Y41C4A.4a protein.
Length = 325
Score = 27.1 bits (57), Expect = 7.6
Identities = 12/17 (70%), Positives = 12/17 (70%)
Frame = -3
Query: 457 PPPSVDRSLLSIVMRPP 407
PP SVD S L VMRPP
Sbjct: 71 PPSSVDASPLQSVMRPP 87
>AB081596-1|BAC19843.1| 325|Caenorhabditis elegans cyclic
AMP-response element bindingprotein 1 gamma 2 protein.
Length = 325
Score = 27.1 bits (57), Expect = 7.6
Identities = 12/17 (70%), Positives = 12/17 (70%)
Frame = -3
Query: 457 PPPSVDRSLLSIVMRPP 407
PP SVD S L VMRPP
Sbjct: 71 PPSSVDASPLQSVMRPP 87
>AB081595-1|BAC19842.1| 306|Caenorhabditis elegans cyclic
AMP-response element bindingprotein 1 beta protein.
Length = 306
Score = 27.1 bits (57), Expect = 7.6
Identities = 12/17 (70%), Positives = 12/17 (70%)
Frame = -3
Query: 457 PPPSVDRSLLSIVMRPP 407
PP SVD S L VMRPP
Sbjct: 52 PPSSVDASPLQSVMRPP 68
>Z83114-5|CAB05550.2| 485|Caenorhabditis elegans Hypothetical
protein K09B11.1 protein.
Length = 485
Score = 26.6 bits (56), Expect = 10.0
Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 2/96 (2%)
Frame = +1
Query: 178 GSELLLFS*CLAYLNFNLSP--LIITIFVIKYYS*LRRFIYFFNTLIVYLSSIK*KIYXQ 351
G EL C Y ++N SP L++ I+ K YS + F T ++ L + +
Sbjct: 43 GIELRDVEGCKRYSSYNQSPSELLLRIWSSKGYSTTHLYQLFAKTKLIRLMRMMRSQVHE 102
Query: 352 LYXYCYXNISGYXLQKRXQAGASRCSAMSDRLKEEE 459
Y Y ++ + Q S + RLK+ E
Sbjct: 103 KYHYLENKVTNSTSRVSKQMVQPPGSQSASRLKKTE 138
>AF348167-1|AAK37545.1| 485|Caenorhabditis elegans Pelle IRAK-like
kinase 1 protein.
Length = 485
Score = 26.6 bits (56), Expect = 10.0
Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 2/96 (2%)
Frame = +1
Query: 178 GSELLLFS*CLAYLNFNLSP--LIITIFVIKYYS*LRRFIYFFNTLIVYLSSIK*KIYXQ 351
G EL C Y ++N SP L++ I+ K YS + F T ++ L + +
Sbjct: 43 GIELRDVEGCKRYSSYNQSPSELLLRIWSSKGYSTTHLYQLFAKTKLIRLMRMMRSQVHE 102
Query: 352 LYXYCYXNISGYXLQKRXQAGASRCSAMSDRLKEEE 459
Y Y ++ + Q S + RLK+ E
Sbjct: 103 KYHYLENKVTNSTSRVSKQMVQPPGSQSASRLKKTE 138
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,139,053
Number of Sequences: 27780
Number of extensions: 151442
Number of successful extensions: 368
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 368
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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