Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS334F11f
         (498 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    28   0.047
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    28   0.047
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    28   0.047
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   7.1  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   9.4  

>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 28.3 bits (60), Expect = 0.047
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +1

Query: 175 CGSE-LLLFS*CLAYLNFNLSPLIITIFVIKYYS*LRRFI 291
           C S+ ++ F   L Y+N  L+PLI TIF + Y    RR +
Sbjct: 357 CPSDRMVYFITWLGYVNSALNPLIYTIFNLDYRRAFRRLL 396


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 28.3 bits (60), Expect = 0.047
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +1

Query: 175 CGSE-LLLFS*CLAYLNFNLSPLIITIFVIKYYS*LRRFI 291
           C S+ ++ F   L Y+N  L+PLI TIF + Y    RR +
Sbjct: 357 CPSDRMVYFITWLGYVNSALNPLIYTIFNLDYRRAFRRLL 396


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 28.3 bits (60), Expect = 0.047
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +1

Query: 175 CGSE-LLLFS*CLAYLNFNLSPLIITIFVIKYYS*LRRFI 291
           C S+ ++ F   L Y+N  L+PLI TIF + Y    RR +
Sbjct: 357 CPSDRMVYFITWLGYVNSALNPLIYTIFNLDYRRAFRRLL 396


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 8/30 (26%), Positives = 17/30 (56%)
 Frame = +1

Query: 208 LAYLNFNLSPLIITIFVIKYYS*LRRFIYF 297
           L Y+N  ++P+I T+F  ++     + + F
Sbjct: 665 LGYMNSFVNPVIYTVFNPEFRKAFHKLVSF 694


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -1

Query: 123 LYFNVQINRTLLFY 82
           ++FN+ + R  LFY
Sbjct: 225 IFFNITLRRKTLFY 238


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,557
Number of Sequences: 438
Number of extensions: 2069
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13618701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)