Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS334F08f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.18c |ssl3||cohesin loading factor Ssl3|Schizosaccharomy...    26   3.0  
SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|c...    26   3.0  
SPAC23H3.14 |||LAlv9 family protein|Schizosaccharomyces pombe|ch...    26   3.9  
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce...    26   3.9  
SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    25   6.8  
SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M...    25   6.8  

>SPAC1687.18c |ssl3||cohesin loading factor Ssl3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 559

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -3

Query: 201 VNQTWLKVFSLSGFPVVAQSTSTR 130
           +NQ +L ++ +SGF  ++ STS R
Sbjct: 278 INQLYLLIYLISGFCYISDSTSGR 301


>SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1111

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +1

Query: 433 NHIG*LAKSSRETEGAILYKVHLNSC 510
           N I  L +SSRE   A L+K  L SC
Sbjct: 819 NEINQLIESSREAFSATLFKAALKSC 844


>SPAC23H3.14 |||LAlv9 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 469

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +1

Query: 121 HYVPSTCALCDYRETRQ*EYLE 186
           HY+PST  + DY ET   E+++
Sbjct: 385 HYLPSTSCISDYGETFLLEWMK 406


>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 681

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +2

Query: 158 GKPDNENTLSHVWFTTRHTRPSS 226
           GK +N+N+ S+ + + R+TRP S
Sbjct: 519 GKIENDNSKSNDYLSVRNTRPRS 541


>SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 416

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 519 RQLTTVQMYFVQYGTFGLS 463
           R +  +Q+YF  Y TFG S
Sbjct: 8   RTIFLIQLYFFNYSTFGCS 26


>SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 416

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 519 RQLTTVQMYFVQYGTFGLS 463
           R +  +Q+YF  Y TFG S
Sbjct: 8   RTIFLIQLYFFNYSTFGCS 26


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,104,777
Number of Sequences: 5004
Number of extensions: 40826
Number of successful extensions: 72
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)