Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS334F08f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1216 + 27077570-27078313                                         28   4.0  
10_08_1040 + 22503641-22503681,22503838-22504299,22506952-225073...    28   4.0  
07_03_1734 + 29120474-29120705,29120839-29120949,29121854-291219...    28   4.0  
01_03_0147 - 13125065-13126679,13126802-13127664                       27   6.9  
01_02_0036 + 10468636-10468938,10469014-10469109,10469247-104694...    27   9.1  

>12_02_1216 + 27077570-27078313
          Length = 247

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -3

Query: 132 RYVVRRLRCVWGVSSLWRRILGA*E 58
           R +  RLRC W VS  W+ I  A E
Sbjct: 115 REMAERLRCAWAVSRAWQSIAVARE 139


>10_08_1040 +
           22503641-22503681,22503838-22504299,22506952-22507361,
           22507484-22507640,22507718-22507937,22508053-22508106,
           22508193-22508272,22508359-22508636,22509193-22509515,
           22509590-22509853,22510453-22510860
          Length = 898

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = +3

Query: 99  PTHSAGAALRTEYLCSVRLQGNQTMRIP 182
           P  S G ALRT   C VRL  N    +P
Sbjct: 218 PARSGGDALRTPANCGVRLHANNGTALP 245


>07_03_1734 +
           29120474-29120705,29120839-29120949,29121854-29121966,
           29122119-29124128
          Length = 821

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +3

Query: 201 RLDTPALVHIFPPSDLRLTIFYRYV 275
           R+DT AL+HIF P  LR   F+ ++
Sbjct: 742 RVDTKALLHIFRPFCLRPEAFFPFI 766


>01_03_0147 - 13125065-13126679,13126802-13127664
          Length = 825

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -3

Query: 192 TWLKVFSLSGFPVVAQSTSTRYVVRRLR 109
           T LKV S+SG P   ++T    V+RRL+
Sbjct: 205 TGLKVVSISGMPGAGKTTLATAVLRRLK 232


>01_02_0036 +
           10468636-10468938,10469014-10469109,10469247-10469453,
           10470762-10471097,10471469-10471582,10471634-10471639
          Length = 353

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 15/52 (28%), Positives = 21/52 (40%)
 Frame = -2

Query: 253 RRRSLGGKM*TRAGVSSREPNMAQGILIVWFPCSRTEHKYSVRSAAPALCVG 98
           + R +GG+  T A   +RE    Q       PC +       RS AP +  G
Sbjct: 267 KMRRVGGQDETAAAAPARENGEQQAAAAAELPCRKPRVSVRARSEAPMISDG 318


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,600,216
Number of Sequences: 37544
Number of extensions: 264975
Number of successful extensions: 464
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 464
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)