Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS334F08f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   1.4  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    22   3.3  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   3.3  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   5.8  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   5.8  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   7.7  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   7.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   7.7  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +2

Query: 149 ATTGKPDNENTLSHVWFTTRHTRPSSHLPSE 241
           +TT  PD E+ L+H    +    P+ H+  E
Sbjct: 636 STTTSPDKEHVLAHNDLMSPLDEPAVHIKQE 666


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = -3

Query: 171 LSGFPVVAQSTSTRYVVRRLRCVWGVSSLWRRI 73
           +SG  ++ Q +S  Y  +    +W VS+ +++I
Sbjct: 351 ISGIKIIKQISSNIYERQNNEYIWIVSNKYQKI 383


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 42  LVSTSALTHLKFSAIVTRPPTHSA 113
           +V TSAL  +  S  +T PP + A
Sbjct: 296 IVLTSALQEMNKSKSITEPPKNCA 319


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 7/26 (26%), Positives = 18/26 (69%)
 Frame = +2

Query: 377 FYLKLNYKSIFFCTCIMS*TILVNWL 454
           FY+ +  K++F+   ++  T+L+++L
Sbjct: 225 FYIIIRRKTLFYTVNLILPTVLISFL 250


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 7/27 (25%), Positives = 19/27 (70%)
 Frame = +1

Query: 427 VMNHIG*LAKSSRETEGAILYKVHLNS 507
           ++  +G L +++ +   ++LYK++LN+
Sbjct: 667 MVGSLGKLTETNPKLARSVLYKIYLNT 693


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +3

Query: 219 LVHIFPPSDLRLTIFYRYVIEYVIL 293
           +V I PP+ L + +  +Y+I  +IL
Sbjct: 293 VVEIIPPTSLVVPLLGKYLIFAMIL 317


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +3

Query: 219 LVHIFPPSDLRLTIFYRYVIEYVIL 293
           +V I PP+ L + +  +Y+I  +IL
Sbjct: 293 VVEIIPPTSLVVPLLGKYLIFAMIL 317


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +2

Query: 413  CTCIMS*TILVNWLS 457
            CT + S TI ++W+S
Sbjct: 1090 CTTLTSQTIRISWMS 1104


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,615
Number of Sequences: 438
Number of extensions: 3014
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)