Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS334F07f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2A9.06c |||di-trans,poly-cis-decaprenylcistransferase|Schizo...    26   3.9  
SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|ch...    25   6.8  
SPCC31H12.02c |mug73||membrane transporter |Schizosaccharomyces ...    25   6.8  
SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c...    25   9.0  
SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate syn...    25   9.0  

>SPBC2A9.06c |||di-trans,
           poly-cis-decaprenylcistransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 258

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +2

Query: 95  YVQLWQYKINYGTYD*QCHWAISTSEFNLSFI 190
           Y+ LW  +  YG +D   +W   T  + L+F+
Sbjct: 8   YLALWVIQSVYGAWDWAKNWVFWTCSYLLNFL 39


>SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 530

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -3

Query: 501 SIESWLRLPLQVPPP 457
           S +SW  +P Q PPP
Sbjct: 471 SFDSWTAVPYQAPPP 485


>SPCC31H12.02c |mug73||membrane transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 306

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/39 (23%), Positives = 20/39 (51%)
 Frame = +2

Query: 83  RVSRYVQLWQYKINYGTYD*QCHWAISTSEFNLSFIIFF 199
           R+  YV+  Q+ IN+       HW +  S   +++++ +
Sbjct: 96  RMVYYVRYIQWLINFPLIIVMLHWTVGVSILEIAYVVCY 134


>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 479

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = +1

Query: 454 HWWRHLQW 477
           +WWRHL W
Sbjct: 57  NWWRHLNW 64


>SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate
           synthase Lsp1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 534

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 98  RNVKHDEDVLTLIVLEKSTSNFYKSTHNFHHF 3
           +N +   D L++I   + T N Y   HNFH+F
Sbjct: 312 KNYRISADRLSVI---RETLNQYVGVHNFHNF 340


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,761,126
Number of Sequences: 5004
Number of extensions: 29438
Number of successful extensions: 42
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)