Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS334F07f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0347 + 2658545-2659309                                           29   2.3  
04_01_0148 + 1710369-1710531,1711821-1712279,1712769-1712915,171...    28   5.2  
03_05_0625 - 26225201-26225879,26226706-26227553                       28   5.2  

>12_01_0347 + 2658545-2659309
          Length = 254

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +2

Query: 410 AGRHRRGQADTIERTIGGGTCSG 478
           A RHRR   +T  R +GGG C G
Sbjct: 142 ARRHRRWSLETRPRGVGGGCCPG 164


>04_01_0148 +
           1710369-1710531,1711821-1712279,1712769-1712915,
           1713004-1714170,1714378-1714430
          Length = 662

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -1

Query: 95  NVKHDEDVLTLIVLEKSTSNFYKS 24
           NV HD  + +L  LEK+T NF+ +
Sbjct: 312 NVAHDPKIFSLEELEKATDNFHST 335


>03_05_0625 - 26225201-26225879,26226706-26227553
          Length = 508

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +2

Query: 353 KYQLISFPLFSLSDLSHLCAGRHRRG 430
           KYQ+I  P    +  SH C GR  +G
Sbjct: 290 KYQVIKMPTVRSNGHSHFCLGRSEKG 315


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,752,699
Number of Sequences: 37544
Number of extensions: 165754
Number of successful extensions: 354
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 354
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)