Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS334F04f
         (521 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    27   0.10 
AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein p...    27   0.10 
AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein p...    27   0.10 
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   1.2  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    22   2.9  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    22   2.9  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    22   3.8  
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    21   8.7  
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    21   8.7  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    21   8.7  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    21   8.7  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    21   8.7  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    21   8.7  

>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 27.1 bits (57), Expect = 0.10
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -2

Query: 370 KLQEESRLNPEPIGLDLSTGEAFKPTDLGILDN 272
           K  +E  + PEPI   LST  +  P+   ++ N
Sbjct: 310 KRMKEGLIPPEPISASLSTSNSNSPSSTNLIQN 342


>AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 27.1 bits (57), Expect = 0.10
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -2

Query: 370 KLQEESRLNPEPIGLDLSTGEAFKPTDLGILDN 272
           K  +E  + PEPI   LST  +  P+   ++ N
Sbjct: 99  KRMKEGLIPPEPISASLSTSNSNSPSSTNLIQN 131


>AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 27.1 bits (57), Expect = 0.10
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -2

Query: 370 KLQEESRLNPEPIGLDLSTGEAFKPTDLGILDN 272
           K  +E  + PEPI   LST  +  P+   ++ N
Sbjct: 99  KRMKEGLIPPEPISASLSTSNSNSPSSTNLIQN 131


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 10/36 (27%), Positives = 13/36 (36%)
 Frame = -1

Query: 260 ETNIEFLFSDRKQPPPCRRDYESRNEQPQRIIINKC 153
           E   E     R +PP  R  +     QP   +  KC
Sbjct: 400 EATAELKLGGRFEPPQIRHAFNEETVQPGNSVFLKC 435


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -1

Query: 425 YS*NSGR*LWLRCSRYYSK 369
           +S N+G  +WL CS ++ +
Sbjct: 403 WSVNAGMWMWLSCSSFFQQ 421


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 7/29 (24%), Positives = 17/29 (58%)
 Frame = -2

Query: 304 FKPTDLGILDNYIVKKQILNSCSVIASNL 218
           F+P +L ++  Y+   ++LN+   +  N+
Sbjct: 243 FRPVELSLMQLYLGHNKLLNATKDLFGNM 271


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +3

Query: 6   KCSDSTCNQNCEVSVD 53
           KC      QNCE++VD
Sbjct: 209 KCPKGFQGQNCELNVD 224


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +1

Query: 211 QGGGCLRSLNRNSIFVSSR 267
           +G  C R L+RN  F+  R
Sbjct: 311 KGSSCYRLLSRNGQFIYLR 329


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +3

Query: 165 YYPLRLLIPALIISS 209
           YY   L++P ++ISS
Sbjct: 213 YYFFNLIVPCVLISS 227


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +3

Query: 165 YYPLRLLIPALIISS 209
           YY   L++P ++ISS
Sbjct: 213 YYFFNLIVPCVLISS 227


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +3

Query: 165 YYPLRLLIPALIISS 209
           YY   L++P ++ISS
Sbjct: 213 YYFFNLIVPCVLISS 227


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +3

Query: 165 YYPLRLLIPALIISS 209
           YY   L++P ++ISS
Sbjct: 213 YYFFNLIVPCVLISS 227


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +3

Query: 165 YYPLRLLIPALIISS 209
           YY   L++P ++ISS
Sbjct: 213 YYFFNLIVPCVLISS 227


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,120
Number of Sequences: 336
Number of extensions: 2102
Number of successful extensions: 13
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12573240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)