Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS334F03f
         (394 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   2.4  
SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3 |Schi...    25   4.2  
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    24   7.3  
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ...    24   7.3  

>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = -2

Query: 264 SSISLRPVVSMSQPIREYFPGGRPTGFSASAGGTSVFASISLPFTFTSVT 115
           +S S+ P  + + P+    P   PT  S     T+   S S+P+T T VT
Sbjct: 395 TSTSIPPTGNSTTPVTPTVP---PTSSSTPLTTTNCTTSTSVPYTSTPVT 441


>SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 606

 Score = 25.0 bits (52), Expect = 4.2
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 7/45 (15%)
 Frame = +1

Query: 22  IRRASYRSTRLIFCLPTSVHQRVC----KLGINGH---GD*SESE 135
           +  AS RS+ L+FC+      +VC    KLGI+     G+ ++SE
Sbjct: 259 LEHASNRSSTLVFCINVEHSLKVCNAFRKLGIDARALFGETNDSE 303


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1692

 Score = 24.2 bits (50), Expect = 7.3
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -3

Query: 218 ESTFLVGDRLASQPVREALQYSLPF 144
           E+ +  G+RL+S P  EAL  SL F
Sbjct: 880 ETLYANGNRLSSFPKNEALSKSLRF 904


>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 791

 Score = 24.2 bits (50), Expect = 7.3
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +2

Query: 119 TEVKVNGSE-MEANTEVPPALAEKPVGLPPGKYSLIGWDMDTTGRRL 256
           TEV     E ++ NT  P    EKP    P K S++    +TTG +L
Sbjct: 377 TEVSSEKVEKVDGNTSSPSKEEEKP-STEPEKPSVVTQRKETTGTKL 422


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,712,619
Number of Sequences: 5004
Number of extensions: 33660
Number of successful extensions: 91
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 130061696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)