Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS334F03f
(394 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0366 - 22389591-22390527,22391296-22391429,22391762-223918... 31 0.44
07_03_0861 + 22072041-22072789,22074065-22074164 29 1.8
06_03_0422 + 20612886-20613059,20613170-20613589,20613663-206137... 29 1.8
06_03_0517 - 21674155-21674334,21674420-21674674,21674829-216749... 28 3.1
06_01_0860 - 6514921-6515034,6515125-6515196,6515344-6515400,651... 27 5.4
01_04_0064 - 15600467-15600528,15600606-15600647,15600732-156011... 27 5.4
08_02_0661 - 19780036-19781002,19781244-19781298,19782760-19783099 27 7.1
03_02_0757 - 10940993-10941112,10941218-10941418,10941661-109417... 27 7.1
09_06_0311 + 22218219-22218421,22219157-22219422,22219881-222200... 26 9.4
05_01_0192 + 1394342-1396645 26 9.4
>02_04_0366 -
22389591-22390527,22391296-22391429,22391762-22391816,
22392364-22393225,22393342-22393459,22393647-22393737,
22394627-22394670
Length = 746
Score = 30.7 bits (66), Expect = 0.44
Identities = 21/75 (28%), Positives = 33/75 (44%)
Frame = -2
Query: 297 CFGVYAAIWHISSISLRPVVSMSQPIREYFPGGRPTGFSASAGGTSVFASISLPFTFTSV 118
C + +++ S+ M + +R PG P GF+ AG SVF +S+ FTS+
Sbjct: 484 CILFWTVYSQMTTFSVEQATRMDRHLR---PGAAPGGFAIPAGSLSVFLFLSI-LLFTSL 539
Query: 117 TMAINA*FANSLMNR 73
+ A L R
Sbjct: 540 NERVLVPAARRLTRR 554
>07_03_0861 + 22072041-22072789,22074065-22074164
Length = 282
Score = 28.7 bits (61), Expect = 1.8
Identities = 14/43 (32%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Frame = +2
Query: 236 DTTGRRLIDEICQIAAYTPKQTYSQYIMPYGDLN-PGARRRHM 361
D RR+I +IC I+ ++PKQ +S+ ++ + + GAR+ ++
Sbjct: 226 DALRRRMI-QICYISHWSPKQCFSRRLVWFNEKECSGARKEYL 267
>06_03_0422 +
20612886-20613059,20613170-20613589,20613663-20613724,
20613834-20613999
Length = 273
Score = 28.7 bits (61), Expect = 1.8
Identities = 14/63 (22%), Positives = 26/63 (41%)
Frame = -2
Query: 315 IYWE*VCFGVYAAIWHISSISLRPVVSMSQPIREYFPGGRPTGFSASAGGTSVFASISLP 136
+ W + A+ H+S L P V++ + FP R ++ + + AS+ L
Sbjct: 93 VAWGAAVMAMVYAVGHVSGAHLNPAVTLGFAVAGRFPWRRAPAYALAQTAAATAASVVLR 152
Query: 135 FTF 127
F
Sbjct: 153 LMF 155
>06_03_0517 -
21674155-21674334,21674420-21674674,21674829-21674969,
21675070-21675228,21676578-21676738,21680167-21680302
Length = 343
Score = 27.9 bits (59), Expect = 3.1
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = +2
Query: 173 ALAEKPVGLPPGKYSLIGWDMDTTGRRLIDEICQIAAYTPKQTYSQYIMPYGDL 334
ALA+K V PP + + G +I + Q+ P QT++++ YG +
Sbjct: 25 ALADKLVAAPPPRKNRANPPPAVPGLPIIGNLHQLKEKKPHQTFAKWSETYGPI 78
>06_01_0860 -
6514921-6515034,6515125-6515196,6515344-6515400,
6515512-6515650,6515737-6515921,6516043-6516126,
6516552-6516674,6518043-6518219,6518331-6518400,
6518478-6518574,6519022-6519097,6519240-6519329,
6519548-6519655,6520715-6520756,6520854-6521045,
6521239-6521309,6521396-6521550,6521999-6522064,
6522769-6522820,6523476-6523566,6523897-6524094,
6524173-6524267,6524361-6524485,6524586-6525016
Length = 969
Score = 27.1 bits (57), Expect = 5.4
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -2
Query: 288 VYAAIWHISSISLRPVVSMSQPIREYFP 205
+ A WHI+ +LR V+ QP YFP
Sbjct: 414 IQAEDWHIAIEALREVLPSLQPAIVYFP 441
>01_04_0064 -
15600467-15600528,15600606-15600647,15600732-15601107,
15601186-15601447,15602992-15603158,15603344-15603484,
15603575-15603643
Length = 372
Score = 27.1 bits (57), Expect = 5.4
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +2
Query: 227 WDMDTTGRRLIDEICQIAAYTPKQTYSQYIMPYGDLNPGARRR 355
W++ I E+C++ A+ SQYI Y D + RR
Sbjct: 163 WNVFDADEAGIQEVCRVLAHLYSLPKSQYIQVYKDNDSFTHRR 205
>08_02_0661 - 19780036-19781002,19781244-19781298,19782760-19783099
Length = 453
Score = 26.6 bits (56), Expect = 7.1
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = +2
Query: 173 ALAEKPVGLPPGKYSLIGWDMDTTGRRLIDEICQIA 280
A A P G+PP L GW + T R D + A
Sbjct: 215 AAAVAPDGVPPSLLRLKGWQVSKTSRTSYDGLADHA 250
>03_02_0757 -
10940993-10941112,10941218-10941418,10941661-10941795,
10941948-10942088,10942214-10942405,10942624-10942748,
10942828-10942903,10943024-10943173,10943467-10943856,
10944078-10944227,10944430-10944710,10945034-10945230,
10945836-10946035,10946422-10946469,10946566-10946688,
10946771-10946882,10946988-10947103,10947526-10947660
Length = 963
Score = 26.6 bits (56), Expect = 7.1
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +1
Query: 184 EASRSPTRKVLSYWLGHGYNRTETN 258
EA S TRK LS WL +G++ T N
Sbjct: 885 EALGSGTRKKLSSWLVNGHDSTPDN 909
>09_06_0311 + 22218219-22218421,22219157-22219422,22219881-22220050,
22220149-22220365,22220798-22221021,22221559-22221738,
22221875-22222013,22222107-22222255,22223394-22223505,
22223998-22224506,22224661-22224784,22224904-22225178,
22225507-22225626,22225707-22225769,22225861-22226052,
22226381-22226440,22226535-22226738,22226926-22227051,
22227093-22227254,22227357-22227476,22227665-22227820,
22227895-22227957,22228041-22228168,22228524-22228920,
22229442-22229544,22229646-22229776,22230096-22230167,
22230472-22230553,22231083-22231190,22231288-22231429,
22231659-22231698,22231746-22231876,22232215-22232301,
22232395-22232605,22232687-22232741,22232836-22232927,
22233011-22233071,22233361-22233719
Length = 2010
Score = 26.2 bits (55), Expect = 9.4
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +2
Query: 242 TGRRLIDEICQIAAYTPKQTYSQYIMPYGDLNPGA 346
+G+R++ ++ ++ Y P Q + +YI L PGA
Sbjct: 1132 SGQRVLSQVVKVEVYKPLQIHPEYIY----LTPGA 1162
>05_01_0192 + 1394342-1396645
Length = 767
Score = 26.2 bits (55), Expect = 9.4
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = -2
Query: 246 PVVSMSQPIREYFPGGRPTGFSASAGGTSVFASISLPFTFTSVT 115
PV+S + EY G GFSAS G++ ++ +TF++ T
Sbjct: 206 PVLSAPLDLGEYVKGDAFVGFSASTQGSTEMHAVEW-WTFSTPT 248
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,194,344
Number of Sequences: 37544
Number of extensions: 225705
Number of successful extensions: 634
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 634
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 672845152
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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