Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS334F03f
         (394 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77657-5|CAB01145.2|  381|Caenorhabditis elegans Hypothetical pr...    31   0.39 
U41012-2|AAV28364.1|  411|Caenorhabditis elegans Hypothetical pr...    30   0.51 
U41012-1|AAA82294.3|  397|Caenorhabditis elegans Hypothetical pr...    30   0.51 
Z83114-7|CAJ76943.1|  525|Caenorhabditis elegans Hypothetical pr...    29   1.6  
Z83114-6|CAB63235.1|  589|Caenorhabditis elegans Hypothetical pr...    29   1.6  
U53335-1|AAA96169.1|  431|Caenorhabditis elegans Hypothetical pr...    28   2.1  
U46673-3|AAC48151.1|  506|Caenorhabditis elegans Aldehyde dehydr...    28   2.1  
AF067216-3|AAC17525.1|  430|Caenorhabditis elegans Hypothetical ...    28   2.1  
Z68214-5|CAA92446.2|  397|Caenorhabditis elegans Hypothetical pr...    28   2.7  
Z68214-4|CAA92447.1|  397|Caenorhabditis elegans Hypothetical pr...    28   2.7  
Z68214-3|CAA92445.1|  399|Caenorhabditis elegans Hypothetical pr...    28   2.7  
Z72509-1|CAA96645.1|  339|Caenorhabditis elegans Hypothetical pr...    27   4.8  
AL132949-7|CAB61080.1| 1168|Caenorhabditis elegans Hypothetical ...    27   4.8  
Z81052-1|CAB02872.1| 1175|Caenorhabditis elegans Hypothetical pr...    27   6.3  
AF237467-1|AAF60326.1| 1175|Caenorhabditis elegans pyruvate carb...    27   6.3  
AF016415-6|AAB65267.1|  283|Caenorhabditis elegans Lysozyme prot...    27   6.3  
U97593-5|AAB52880.1| 1175|Caenorhabditis elegans Prion-like-(q/n...    26   8.4  
AC024857-3|AAK31568.6|  611|Caenorhabditis elegans Hypothetical ...    26   8.4  

>Z77657-5|CAB01145.2|  381|Caenorhabditis elegans Hypothetical
           protein F08H9.8 protein.
          Length = 381

 Score = 30.7 bits (66), Expect = 0.39
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -2

Query: 213 YFPGGRPTGFSASAGGTSVFASISLPFTF 127
           Y P    + +  S GGT VF S+S  FTF
Sbjct: 46  YMPFSETSSYCQSLGGTQVFISLSYEFTF 74


>U41012-2|AAV28364.1|  411|Caenorhabditis elegans Hypothetical
           protein C06A6.4b protein.
          Length = 411

 Score = 30.3 bits (65), Expect = 0.51
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 265 DMPNSSIYSETDLFPIYYAIW*P*PWSETSSHDG 366
           D+P+  +YS TD+ P +   W   P+S     DG
Sbjct: 65  DLPSIMLYSHTDVVPTFREYWTHDPYSAFKDEDG 98


>U41012-1|AAA82294.3|  397|Caenorhabditis elegans Hypothetical
           protein C06A6.4a protein.
          Length = 397

 Score = 30.3 bits (65), Expect = 0.51
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 265 DMPNSSIYSETDLFPIYYAIW*P*PWSETSSHDG 366
           D+P+  +YS TD+ P +   W   P+S     DG
Sbjct: 65  DLPSIMLYSHTDVVPTFREYWTHDPYSAFKDEDG 98


>Z83114-7|CAJ76943.1|  525|Caenorhabditis elegans Hypothetical
           protein K09B11.5b protein.
          Length = 525

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = +1

Query: 22  IRRASYRSTRLIFCLPTSVHQRVCKLGINGHGD 120
           +RRA  R+++ + CL   +  ++C   +N + D
Sbjct: 34  VRRAMQRNSKKVLCLSVKIDGKICHFTLNSNKD 66


>Z83114-6|CAB63235.1|  589|Caenorhabditis elegans Hypothetical
           protein K09B11.5a protein.
          Length = 589

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = +1

Query: 22  IRRASYRSTRLIFCLPTSVHQRVCKLGINGHGD 120
           +RRA  R+++ + CL   +  ++C   +N + D
Sbjct: 98  VRRAMQRNSKKVLCLSVKIDGKICHFTLNSNKD 130


>U53335-1|AAA96169.1|  431|Caenorhabditis elegans Hypothetical
           protein C55C3.4 protein.
          Length = 431

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 108 INA*FANSLMNRCW*TKYEPRRPV 37
           +N  FA  ++ +CW  KYE R P+
Sbjct: 346 VNKEFAEFILTKCWPEKYEDRLPM 369


>U46673-3|AAC48151.1|  506|Caenorhabditis elegans Aldehyde
           dehydrogenase protein 10 protein.
          Length = 506

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +2

Query: 140 SEMEANTEVPPALAEKPVGLPPGKYSLIGWDMDTTGRRLIDEI 268
           SEM + T      A K VG PPG  +++  +  + G+RL+D +
Sbjct: 200 SEMTSVTAWVLMHAFKLVGFPPGVVNMVIGEGKSAGQRLVDHV 242


>AF067216-3|AAC17525.1|  430|Caenorhabditis elegans Hypothetical
           protein C35E7.10a protein.
          Length = 430

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 108 INA*FANSLMNRCW*TKYEPRRPV 37
           +N  FA  ++ +CW  KYE R P+
Sbjct: 346 VNKEFAEFILTKCWPEKYEDRLPM 369


>Z68214-5|CAA92446.2|  397|Caenorhabditis elegans Hypothetical
           protein C10C5.5 protein.
          Length = 397

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +1

Query: 265 DMPNSSIYSETDLFPIYYAIW*P*PWSETSSHDG 366
           ++P+  +YS TD+ P +   W   P+S     DG
Sbjct: 66  ELPSIMLYSHTDVVPTFREHWTHDPYSAFKDEDG 99


>Z68214-4|CAA92447.1|  397|Caenorhabditis elegans Hypothetical
           protein C10C5.4 protein.
          Length = 397

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +1

Query: 265 DMPNSSIYSETDLFPIYYAIW*P*PWSETSSHDG 366
           ++P+  +YS TD+ P +   W   P+S     DG
Sbjct: 66  ELPSIMLYSHTDVVPTFREHWTHDPYSAFKDEDG 99


>Z68214-3|CAA92445.1|  399|Caenorhabditis elegans Hypothetical
           protein C10C5.3 protein.
          Length = 399

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +1

Query: 265 DMPNSSIYSETDLFPIYYAIW*P*PWSETSSHDG 366
           ++P+  +YS TD+ P +   W   P+S     DG
Sbjct: 66  ELPSIMLYSHTDVVPTFREHWTHDPYSAFKDEDG 99


>Z72509-1|CAA96645.1|  339|Caenorhabditis elegans Hypothetical
           protein F32G8.1 protein.
          Length = 339

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 12  TLKHSSCIIPVYAAHILFTN 71
           TL  + C+IP+Y AH++  N
Sbjct: 252 TLVPAVCVIPIYIAHLILEN 271


>AL132949-7|CAB61080.1| 1168|Caenorhabditis elegans Hypothetical
           protein Y53F4B.9 protein.
          Length = 1168

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = +2

Query: 239 TTGRRLIDEICQIAAYTPKQTY--SQYIMPYGD 331
           T+G+   ++IC I   TP+  Y  +  +MP+ D
Sbjct: 162 TSGKLKFNKICSIRVITPRPNYNPNDLVMPHSD 194


>Z81052-1|CAB02872.1| 1175|Caenorhabditis elegans Hypothetical
           protein D2023.2 protein.
          Length = 1175

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
 Frame = +2

Query: 53  SYFVYQHLFINEFA---N*A--LMAMVTEVKVNGSEMEANTEVPPALAEKPVGLPP 205
           +YF+ +H  + +F    N A  L+  + EVKVNG      T++ PA+   P+   P
Sbjct: 473 TYFIDEHPELFQFKPSQNRAQKLLNYLGEVKVNGPTTPLATDLKPAVVSPPIPYIP 528


>AF237467-1|AAF60326.1| 1175|Caenorhabditis elegans pyruvate
           carboxylase protein.
          Length = 1175

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
 Frame = +2

Query: 53  SYFVYQHLFINEFA---N*A--LMAMVTEVKVNGSEMEANTEVPPALAEKPVGLPP 205
           +YF+ +H  + +F    N A  L+  + EVKVNG      T++ PA+   P+   P
Sbjct: 473 TYFIDEHPELFQFKPSQNRAQKLLNYLGEVKVNGPTTPLATDLKPAVVSPPIPYIP 528


>AF016415-6|AAB65267.1|  283|Caenorhabditis elegans Lysozyme protein
           7 protein.
          Length = 283

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -2

Query: 300 VCFGVYAAIWHISSISLRPVVSMSQPIR 217
           V F V A + H +S+ + P+V  S P++
Sbjct: 7   VIFSVLAVLCHSASVKVPPIVDSSLPVK 34


>U97593-5|AAB52880.1| 1175|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 22,
           isoform a protein.
          Length = 1175

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +1

Query: 184 EASRSPTRKVLSYWLGHGYNRTETNR 261
           EA R+P R+   YW GH   + E  R
Sbjct: 485 EALRAPKREQSPYWAGHSEQKHEAWR 510


>AC024857-3|AAK31568.6|  611|Caenorhabditis elegans Hypothetical
           protein Y71G12A.2 protein.
          Length = 611

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = +2

Query: 26  VVHHTGLRGSYFVYQHLFINEFAN*ALM 109
           ++ H G+  S+ VYQH  ++ F+  +L+
Sbjct: 21  IISHAGVDQSFSVYQHALVSYFSRNSLV 48


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,502,011
Number of Sequences: 27780
Number of extensions: 191038
Number of successful extensions: 584
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 584
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 598330768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)