Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS334F02f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc...    27   2.2  
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc...    26   3.9  
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang...    25   5.2  
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    25   6.8  
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    25   9.0  

>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
           Fep1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 564

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 364 DDASPPPDEWGPSSNFCMRCCTSISP 287
           +D+SPP +   PS  FC  C T+ +P
Sbjct: 159 EDSSPPHE---PSVTFCQNCATTNTP 181


>SPBC30D10.10c |tor1||phosphatidylinositol kinase
            Tor1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2335

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 494  IVQQSGIPKYLLRCYSFWXVCARW 423
            ++QQ+  P+ L RCY  W  C+ W
Sbjct: 2314 LIQQATAPENLCRCYVGW--CSFW 2335


>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
           factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +2

Query: 203 SSKSWCPDTNSTSGS 247
           S KSW PD NST+ S
Sbjct: 165 SRKSWNPDVNSTTSS 179


>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
           zf-fungal binuclear cluster type |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 977

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -1

Query: 335 GSQF*FLHALLHIDISWMFMCSG 267
           G+Q+ FLH   H  + W+F   G
Sbjct: 701 GAQYAFLHLAYHHTLMWLFRSIG 723


>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +2

Query: 176 WLGTTIQCSSSKSWCPDTNSTSGSRLTPCYSHYT*TSRRYR 298
           W+ +TI+C+   S C       G +   C+S+ T  S  Y+
Sbjct: 342 WI-STIRCNDCNSRCDTKYHFLGHKCNSCHSYNTCISSIYK 381


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,665,845
Number of Sequences: 5004
Number of extensions: 29212
Number of successful extensions: 70
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)