Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS334F02f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0542 + 3971675-3971845,3973791-3973865,3974129-3974608           29   3.0  
07_03_0792 - 21541301-21542143,21542426-21542661,21543177-215433...    28   5.2  

>02_01_0542 + 3971675-3971845,3973791-3973865,3974129-3974608
          Length = 241

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -2

Query: 319 FCMRCCTSISPGCS 278
           FC+ CCTSI P C+
Sbjct: 34  FCLACCTSICPHCA 47


>07_03_0792 -
           21541301-21542143,21542426-21542661,21543177-21543373,
           21543459-21544173,21544250-21544892,21545970-21546139,
           21546442-21546943
          Length = 1101

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +2

Query: 302 ATTHAKIRTGTPFIWRW*CIIRSWPWLSTRG 394
           +++H+++   T + WRW  I R + W   RG
Sbjct: 55  SSSHSRVSDETLWQWRWRQITRPYSWRCRRG 85


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,784,526
Number of Sequences: 37544
Number of extensions: 229096
Number of successful extensions: 643
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)