Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS334E12f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch...    25   5.2  
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos...    25   5.2  
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni...    25   6.8  
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   9.0  
SPAC17A5.05c |||conserved fungal protein|Schizosaccharomyces pom...    25   9.0  

>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
 Frame = +1

Query: 22  IHLRLINAGLLPRIMNQKLTHIEYANGESFDSATVGSYL--VALEQPTGTYKFLSAY 186
           +H+R  N  L P   N+ + HIE+  G+S  +  +G  L    +   T  + F+  Y
Sbjct: 627 VHVRA-NKRLTPAEYNRNIFHIEFDLGDSGLTYDIGEALGVYGVNNKTHVHDFIEEY 682


>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
           Vas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 950

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -2

Query: 151 VLVQLNRIQR*LNQTIRHWHTLYASIS 71
           VL+QL +++  LN++    HT+Y S S
Sbjct: 806 VLIQLRKLESPLNKSPSREHTVYISTS 832


>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
           Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1227

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/40 (27%), Positives = 19/40 (47%)
 Frame = -1

Query: 518 SFHFVSCSLNVHFPVKLS*VAPKRFQCAVNYTHRSVSTAR 399
           S   V CSLN  F + ++ V  + F C    + +++   R
Sbjct: 24  SLKLVKCSLNAQFSMNIAGVLRQNFLCKPGMSFQTLERER 63


>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 682

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = +3

Query: 234 YQRNNSARIDPAPARSVAERIRLALHEHTGPARHAAALYALPDLSVAR-PENRWQP 398
           YQ  N       PA++V +++   +H H    +H    Y+ P+  V R P+N   P
Sbjct: 574 YQYYNPLPAMADPAQNVPQQLPPPIHSHLSDDQHIQ--YSYPNTFVNRFPQNIHHP 627


>SPAC17A5.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 247

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -3

Query: 489 CSFPSEIILSSTKAFSVCSKLYTQVRF 409
           CSF   ++   +K FS C  L  Q R+
Sbjct: 166 CSFALHLLTEPSKLFSTCYALSVQCRW 192


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,155,373
Number of Sequences: 5004
Number of extensions: 42556
Number of successful extensions: 103
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)