Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS334E12f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0737 - 31328473-31330513,31331015-31331184 31 0.74
03_02_0316 - 7408003-7409340 30 1.3
09_04_0222 + 15825878-15826451,15826542-15827017 29 3.0
03_05_0992 + 29528126-29529931 29 3.0
10_08_1016 - 22262760-22264331 28 4.0
08_01_0945 + 9376997-9377818,9378065-9378373,9379510-9379800,938... 28 5.2
12_01_0135 + 1042889-1044255,1045368-1045809 27 6.9
03_05_0871 + 28396964-28399843 27 6.9
11_05_0022 + 18442258-18442619,18443827-18443887,18444070-18444186 27 9.1
11_04_0265 + 15541329-15541568,15541653-15541901,15542172-155423... 27 9.1
>02_05_0737 - 31328473-31330513,31331015-31331184
Length = 736
Score = 30.7 bits (66), Expect = 0.74
Identities = 24/89 (26%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Frame = +1
Query: 13 PKEIHLRLINAGLLPRIMNQKLTHIEYANGESFDSATVGSYLVALEQPTGTYKFLSAYI- 189
P E RL+N + + K+ ++ + N ++F +A S+ + + +F+S Y+
Sbjct: 332 PVEFVQRLLNE----KDKHDKIINVAFGNDKTFQNALNSSFEYFINLNNRSPEFISLYVD 387
Query: 190 DMLCTFHEASTEERVTKEIILPGLILLLR 276
D L + +TEE V E+IL +++L R
Sbjct: 388 DKLRKGLKGATEEDV--EVILDKVMMLFR 414
>03_02_0316 - 7408003-7409340
Length = 445
Score = 29.9 bits (64), Expect = 1.3
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +1
Query: 193 MLCTFHEASTEERVTKEIILPGLILLLREVLPNA 294
M+ T+H AS++ERV + GL+ L E L +A
Sbjct: 281 MVATYHLASSDERVAARVASTGLVPTLIEALVDA 314
>09_04_0222 + 15825878-15826451,15826542-15827017
Length = 349
Score = 28.7 bits (61), Expect = 3.0
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Frame = +3
Query: 249 SARIDPAPARSVAERIRLALHEHTGPARHAAALYALPDLSVAR---PENRW 392
+A + P PAR A R+ L + +G AR AAA LP+ R PE W
Sbjct: 3 AASLLPQPARGAAARLLLPV---SGAARGAAARLPLPEPPCTRLPLPEQPW 50
>03_05_0992 + 29528126-29529931
Length = 601
Score = 28.7 bits (61), Expect = 3.0
Identities = 17/44 (38%), Positives = 20/44 (45%)
Frame = +3
Query: 216 INRRTCYQRNNSARIDPAPARSVAERIRLALHEHTGPARHAAAL 347
+ RR C +A DPA A S RL H+ P R AAL
Sbjct: 9 LRRRLCTAAVAAAAPDPALASSAELAYRLLRRHHSDPKRLTAAL 52
>10_08_1016 - 22262760-22264331
Length = 523
Score = 28.3 bits (60), Expect = 4.0
Identities = 15/45 (33%), Positives = 19/45 (42%)
Frame = +3
Query: 258 IDPAPARSVAERIRLALHEHTGPARHAAALYALPDLSVARPENRW 392
+ P PA A IR + G RHAA +Y S +P W
Sbjct: 33 MQPNPANMCARCIRARVDITEGVPRHAAVVYCPDCTSYLQPPRSW 77
>08_01_0945 +
9376997-9377818,9378065-9378373,9379510-9379800,
9380060-9380173,9380280-9380981
Length = 745
Score = 27.9 bits (59), Expect = 5.2
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -1
Query: 422 HRSVSTARWLPSVFWSCNTKVRKRIQR 342
HR+V WL + FW+ V +R++R
Sbjct: 65 HRAVGCVAWLAAGFWAVLGAVNRRVRR 91
>12_01_0135 + 1042889-1044255,1045368-1045809
Length = 602
Score = 27.5 bits (58), Expect = 6.9
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = +3
Query: 261 DPAPARSVAERIRLALHEHTGPARHAAALYALPDLSVARPENRWQPPRC 407
DPAP L + T P ++ ALP A+P+ R + P+C
Sbjct: 133 DPAPPPPPPSHPALLPPDATAPPPPPTSVAALPPPPPAQPDKRRREPQC 181
>03_05_0871 + 28396964-28399843
Length = 959
Score = 27.5 bits (58), Expect = 6.9
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +1
Query: 142 ALEQPTGTYKFLSAYIDMLCTFHEASTEERVTKEIILPGLI 264
A+ + G Y A L FHE S E++ +I PG+I
Sbjct: 534 AVSRAEGKYYRRLALHTKLIAFHELSNSEKLRSLLIFPGVI 574
>11_05_0022 + 18442258-18442619,18443827-18443887,18444070-18444186
Length = 179
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +1
Query: 229 RVTKEIILPGLILLLREVLPNAYGWRYTNIRDRRAMLQ 342
++ +IIL G+ L+ E+ GW + I++ +LQ
Sbjct: 141 KIVLKIILKGMKLIGIEIRSRVVGWSFIKIKECHGLLQ 178
>11_04_0265 +
15541329-15541568,15541653-15541901,15542172-15542321,
15542427-15542901,15543132-15543445,15543875-15543973,
15544567-15544659,15544737-15544922
Length = 601
Score = 27.1 bits (57), Expect = 9.1
Identities = 20/79 (25%), Positives = 32/79 (40%)
Frame = -1
Query: 452 KRFQCAVNYTHRSVSTARWLPSVFWSCNTKVRKRIQRCSMARRSRMFV*RQPYAFGNTSR 273
++F A++ T + L S+ NT R+ RC R + Y F +R
Sbjct: 473 EKFMDAIHGCQEEKRTYQLLGSISDLSNTAYREASTRCHKQPRGTVLCGYYAYEFLRVNR 532
Query: 272 RSRINPGRIISLVTRSSVD 216
R R+ + L R+S D
Sbjct: 533 RYRVYAEDLPRLERRTSFD 551
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,963,105
Number of Sequences: 37544
Number of extensions: 285164
Number of successful extensions: 750
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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