Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS334E12f
         (521 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79991-1|BAA11486.1| 1745|Homo sapiens KIAA0169 protein protein.       46   1e-04
BX537774-1|CAD97835.1| 1639|Homo sapiens hypothetical protein pr...    46   1e-04
BC040352-1|AAH40352.1| 1293|Homo sapiens NUP188 protein protein.       46   1e-04
AL672142-10|CAI10845.1| 1749|Homo sapiens nucleoporin 188kDa pro...    46   1e-04
AL592211-4|CAI12368.1| 1749|Homo sapiens nucleoporin 188kDa prot...    46   1e-04

>D79991-1|BAA11486.1| 1745|Homo sapiens KIAA0169 protein protein.
          Length = 1745

 Score = 45.6 bits (103), Expect = 1e-04
 Identities = 23/101 (22%), Positives = 52/101 (51%)
 Frame = +1

Query: 13  PKEIHLRLINAGLLPRIMNQKLTHIEYANGESFDSATVGSYLVALEQPTGTYKFLSAYID 192
           P ++   L + G LP + +   +  +  + E  ++   G+ L+  EQP G Y    A++ 
Sbjct: 622 PAKVWTDLRHTGFLPFVAHPVSSLSQMISAEGMNAGGYGNLLMNSEQPQGEYGVTIAFLR 681

Query: 193 MLCTFHEASTEERVTKEIILPGLILLLREVLPNAYGWRYTN 315
           ++ T  +       ++ ++ P ++ +L+E+LP+ + WRY +
Sbjct: 682 LITTLVKGQLGSTQSQGLV-PCVMFVLKEMLPSYHKWRYNS 721


>BX537774-1|CAD97835.1| 1639|Homo sapiens hypothetical protein
           protein.
          Length = 1639

 Score = 45.6 bits (103), Expect = 1e-04
 Identities = 23/101 (22%), Positives = 52/101 (51%)
 Frame = +1

Query: 13  PKEIHLRLINAGLLPRIMNQKLTHIEYANGESFDSATVGSYLVALEQPTGTYKFLSAYID 192
           P ++   L + G LP + +   +  +  + E  ++   G+ L+  EQP G Y    A++ 
Sbjct: 516 PAKVWTDLRHTGFLPFVAHPVSSLSQMISAEGMNAGGYGNLLMNSEQPQGEYGVTIAFLR 575

Query: 193 MLCTFHEASTEERVTKEIILPGLILLLREVLPNAYGWRYTN 315
           ++ T  +       ++ ++ P ++ +L+E+LP+ + WRY +
Sbjct: 576 LITTLVKGQLGSTQSQGLV-PCVMFVLKEMLPSYHKWRYNS 615


>BC040352-1|AAH40352.1| 1293|Homo sapiens NUP188 protein protein.
          Length = 1293

 Score = 45.6 bits (103), Expect = 1e-04
 Identities = 23/101 (22%), Positives = 52/101 (51%)
 Frame = +1

Query: 13  PKEIHLRLINAGLLPRIMNQKLTHIEYANGESFDSATVGSYLVALEQPTGTYKFLSAYID 192
           P ++   L + G LP + +   +  +  + E  ++   G+ L+  EQP G Y    A++ 
Sbjct: 170 PAKVWTDLRHTGFLPFVAHPVSSLSQMISAEGMNAGGYGNLLMNSEQPQGEYGVTIAFLR 229

Query: 193 MLCTFHEASTEERVTKEIILPGLILLLREVLPNAYGWRYTN 315
           ++ T  +       ++ ++ P ++ +L+E+LP+ + WRY +
Sbjct: 230 LITTLVKGQLGSTQSQGLV-PCVMFVLKEMLPSYHKWRYNS 269


>AL672142-10|CAI10845.1| 1749|Homo sapiens nucleoporin 188kDa
           protein.
          Length = 1749

 Score = 45.6 bits (103), Expect = 1e-04
 Identities = 23/101 (22%), Positives = 52/101 (51%)
 Frame = +1

Query: 13  PKEIHLRLINAGLLPRIMNQKLTHIEYANGESFDSATVGSYLVALEQPTGTYKFLSAYID 192
           P ++   L + G LP + +   +  +  + E  ++   G+ L+  EQP G Y    A++ 
Sbjct: 626 PAKVWTDLRHTGFLPFVAHPVSSLSQMISAEGMNAGGYGNLLMNSEQPQGEYGVTIAFLR 685

Query: 193 MLCTFHEASTEERVTKEIILPGLILLLREVLPNAYGWRYTN 315
           ++ T  +       ++ ++ P ++ +L+E+LP+ + WRY +
Sbjct: 686 LITTLVKGQLGSTQSQGLV-PCVMFVLKEMLPSYHKWRYNS 725


>AL592211-4|CAI12368.1| 1749|Homo sapiens nucleoporin 188kDa
           protein.
          Length = 1749

 Score = 45.6 bits (103), Expect = 1e-04
 Identities = 23/101 (22%), Positives = 52/101 (51%)
 Frame = +1

Query: 13  PKEIHLRLINAGLLPRIMNQKLTHIEYANGESFDSATVGSYLVALEQPTGTYKFLSAYID 192
           P ++   L + G LP + +   +  +  + E  ++   G+ L+  EQP G Y    A++ 
Sbjct: 626 PAKVWTDLRHTGFLPFVAHPVSSLSQMISAEGMNAGGYGNLLMNSEQPQGEYGVTIAFLR 685

Query: 193 MLCTFHEASTEERVTKEIILPGLILLLREVLPNAYGWRYTN 315
           ++ T  +       ++ ++ P ++ +L+E+LP+ + WRY +
Sbjct: 686 LITTLVKGQLGSTQSQGLV-PCVMFVLKEMLPSYHKWRYNS 725


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,331,417
Number of Sequences: 237096
Number of extensions: 1541256
Number of successful extensions: 2686
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2681
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4990119376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)