Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS334E11f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    33   0.020
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    32   0.045
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce...    29   0.56 
SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G family|Schizosaccha...    28   0.97 
SPBC1271.03c |||phosphoprotein phosphatase|Schizosaccharomyces p...    25   9.0  

>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 33.5 bits (73), Expect = 0.020
 Identities = 14/27 (51%), Positives = 19/27 (70%)
 Frame = +3

Query: 21  MGVPQGSILGPFLFLIYINDLPSFIES 101
           +G PQGSI+ P L  IY++ L  FIE+
Sbjct: 419 VGTPQGSIVSPILANIYLHQLDEFIEN 445


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 32.3 bits (70), Expect = 0.045
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
 Frame = +3

Query: 18  KMGVPQGSILGPFLFLIYINDL----PSFIESRHEVVLFADDTSLLFKMKRQ 161
           K+G+PQGSIL  FL   Y+ DL     SF + +  V+L   D  L   + ++
Sbjct: 701 KVGIPQGSILSSFLCHFYMEDLIDEYLSFTKKKGSVLLRVVDDFLFITVNKK 752


>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1210

 Score = 28.7 bits (61), Expect = 0.56
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +3

Query: 63  LIYINDLPSFIESRHEVVLFADDTSLLFK 149
           L+Y+ +  SF+E+ H  VLF D +S  F+
Sbjct: 823 LVYVIENTSFVEASHISVLFEDSSSKAFE 851


>SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 496

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 16/72 (22%), Positives = 34/72 (47%)
 Frame = +3

Query: 93  IESRHEVVLFADDTSLLFKMKRQLQVYDEVNDAISCVVHWFRINNLLLNSKKTKCIKFTL 272
           +  R + ++  +  + L    RQL  + E+ND  S +  +      +L++   +C+   L
Sbjct: 184 LNDREKTLMIQEKKNHLIHSLRQLLAFSEINDFPSEIRSYL---EFILSNLDLECLTLCL 240

Query: 273 KCIKSSLNVRQV 308
           K IK  L + ++
Sbjct: 241 KIIKGILTLDEL 252


>SPBC1271.03c |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 244

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/31 (29%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +3

Query: 168 VYDEVN-DAISCVVHWFRINNLLLNSKKTKC 257
           V+++++ D+    V W + N ++++  KTKC
Sbjct: 129 VWEKIHHDSTGKPVSWSQYNTIIVDDSKTKC 159


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,916,391
Number of Sequences: 5004
Number of extensions: 32894
Number of successful extensions: 83
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)