Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS334E08f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1811 - 40055106-40055174,40055291-40055440,40056696-40056782 90 9e-19
01_06_1812 - 40057904-40057972,40058071-40058220,40059449-40059532 89 2e-18
07_03_0989 + 23161020-23161412 52 2e-07
07_03_0990 + 23173868-23174200 51 5e-07
01_05_0651 + 23930455-23930457,23930543-23930636,23930764-239308... 49 3e-06
01_06_1364 + 36684937-36685281 46 2e-05
07_03_0988 + 23160028-23160360 44 7e-05
01_04_0034 + 15318509-15319567 33 0.11
07_03_0991 + 23174743-23175726 27 9.1
>01_06_1811 - 40055106-40055174,40055291-40055440,40056696-40056782
Length = 101
Score = 90.2 bits (214), Expect = 9e-19
Identities = 46/90 (51%), Positives = 57/90 (63%), Gaps = 5/90 (5%)
Frame = +2
Query: 89 DEKK-----GENEHINLKVLGQDNAIVQFKIKKHTPLRKLMNAYXDRAGLSMQVVRFRFD 253
DEKK G HINLKV GQD V F+IK+ T L+KLMNAY DR + ++ + F FD
Sbjct: 8 DEKKPAGGEGGGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDIKSIAFLFD 67
Query: 254 GQPINENDTPTSLEMEEGDTIEVYQQQTGG 343
G+ +N TP LEME+GD I+ QTGG
Sbjct: 68 GRRLNAEQTPDQLEMEDGDEIDAMLHQTGG 97
>01_06_1812 - 40057904-40057972,40058071-40058220,40059449-40059532
Length = 100
Score = 89.0 bits (211), Expect = 2e-18
Identities = 42/82 (51%), Positives = 52/82 (63%)
Frame = +2
Query: 98 KGENEHINLKVLGQDNAIVQFKIKKHTPLRKLMNAYXDRAGLSMQVVRFRFDGQPINEND 277
+G HINLKV GQD V F+IK+ T L+KLMNAY DR + M + F FDG+ +
Sbjct: 15 EGGGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDMNAIAFLFDGRRLRGEQ 74
Query: 278 TPTSLEMEEGDTIEVYQQQTGG 343
TP LEME+GD I+ QTGG
Sbjct: 75 TPDELEMEDGDEIDAMLHQTGG 96
>07_03_0989 + 23161020-23161412
Length = 130
Score = 52.4 bits (120), Expect = 2e-07
Identities = 28/82 (34%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Frame = +2
Query: 110 EHINLKVLGQDNAIVQFKIKKHTPLRKLMNAYXDRAGLSMQ--VVRFRFDGQPINENDTP 283
E++ LKV G D V + + L+ LM+ Y DR+ +Q RF FDG+ + TP
Sbjct: 37 EYVTLKVQGTDGRAVYRTMLRTEELQGLMDFYYDRSHGRVQRGTGRFLFDGRRLRGWQTP 96
Query: 284 TSLEMEEGDTIEVYQQQTGGVS 349
L+ME+GD + +++ GG +
Sbjct: 97 AELQMEDGDEVNFFEELIGGAA 118
>07_03_0990 + 23173868-23174200
Length = 110
Score = 51.2 bits (117), Expect = 5e-07
Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
Frame = +2
Query: 98 KGENEHINLKVLGQDNAIVQFKIKKHTPLRKLMNAYXDRAGLSMQ--VVRFRFDGQPINE 271
K E++ LKV D V ++ L+ LM+ Y DRA +Q RF +DG+ ++
Sbjct: 25 KRAGEYVTLKVQDTDGRAVYRTMRWTEQLQGLMDFYYDRAHGRVQRGTGRFLYDGRRLSG 84
Query: 272 NDTPTSLEMEEGDTIEVYQQQTGGVS 349
TP L+ME+GD ++ +++ GG +
Sbjct: 85 WQTPAELDMEDGDEVDFFEELIGGAA 110
>01_05_0651 +
23930455-23930457,23930543-23930636,23930764-23930849,
23930930-23931108,23932275-23932482,23932808-23932975
Length = 245
Score = 48.8 bits (111), Expect = 3e-06
Identities = 29/86 (33%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Frame = +2
Query: 68 HINLKMADEKKGENEHINLKVLGQDNA-IVQFKIKKHTPLRKLMNAYXDRAGLSMQVVRF 244
HI+L + E+ E + + V QD A QF++ K KL AY + LS+ + F
Sbjct: 157 HIDLDKSPERHEAREKVVVTV--QDKAGHHQFRLYKDEKFGKLFRAYAKKVNLSVADLTF 214
Query: 245 RFDGQPINENDTPTSLEMEEGDTIEV 322
FDG ++ TP L +E+ D +EV
Sbjct: 215 AFDGDKVDAESTPEDLGLEDEDMVEV 240
>01_06_1364 + 36684937-36685281
Length = 114
Score = 45.6 bits (103), Expect = 2e-05
Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 2/95 (2%)
Frame = +2
Query: 74 NLKMADEKKGENEH-INLKVLGQDNAIVQFKIKKHTPLRKLMNAYXDRAGLSMQVVRF-R 247
+LK+ + G I + V Q A V F IK LR++M+ Y + L + V+F
Sbjct: 17 DLKLVKAEPGTGPGLITITVTSQTFADVYFAIKPRVKLRRVMDLYCGKHSLDPKTVKFID 76
Query: 248 FDGQPINENDTPTSLEMEEGDTIEVYQQQTGGVSL 352
DG+ + TP + +++G TI + Q GG +
Sbjct: 77 DDGRFVRSEQTPEEVGLQDGSTISLAIDQQGGACI 111
>07_03_0988 + 23160028-23160360
Length = 110
Score = 44.0 bits (99), Expect = 7e-05
Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Frame = +2
Query: 116 INLKVLGQDNAIVQFKIKKHTPLRKLMNAYXDRA-GLSMQVVRFRFDGQPINENDTPTSL 292
I LKV+ Q++ ++ I+ L+ +M+ Y +A ++ F FDG + + TP L
Sbjct: 21 ITLKVMDQEDRRIRHTIRMADKLQVVMDMYYAKAPDVTYGTGTFLFDGIRLKGDMTPMGL 80
Query: 293 EMEEGDTIEVYQQQTGG 343
EM +GDT++ + GG
Sbjct: 81 EMVDGDTVDFFPVMIGG 97
>01_04_0034 + 15318509-15319567
Length = 352
Score = 33.5 bits (73), Expect = 0.11
Identities = 19/77 (24%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Frame = +2
Query: 116 INLKVLGQDNAIVQFKIKKHTPLRKLMNAYXDRAGLSM--QVVRFRFDGQPINENDTPTS 289
+ + +L A + +++ L+ LM+ R SM ++G+ + ++ TP
Sbjct: 276 VTIDLLTMVKAKRTYTLRRTDKLQGLMDLCLSREPASMYRHGCVLIYEGRRVQDSQTPDD 335
Query: 290 LEMEEGDTIEVYQQQTG 340
L++E+GDTI +Q G
Sbjct: 336 LKLEDGDTIHAIARQVG 352
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/65 (21%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Frame = +2
Query: 134 GQDNAIVQFKIKKHTPLRKLMNAYXDRAGLSMQVVRFR--FDGQPINENDTPTSLEMEEG 307
G+ +V +++ L++L++ Y Q + + G+ + +TP EME+G
Sbjct: 202 GRSGVVVTRPMRRTDELQRLIDYYFAMVPTDDQNGEWAVTYGGRQVGGEETPADYEMEDG 261
Query: 308 DTIEV 322
D + +
Sbjct: 262 DQLRL 266
>07_03_0991 + 23174743-23175726
Length = 327
Score = 27.1 bits (57), Expect = 9.1
Identities = 17/76 (22%), Positives = 30/76 (39%), Gaps = 2/76 (2%)
Frame = +2
Query: 116 INLKVLGQDNAIVQFKIKKHTPLRKLMNAYXDRAGLSMQVVR--FRFDGQPINENDTPTS 289
I L+V + + ++ L LM+ Y M F G+ + + TP
Sbjct: 25 ITLRVKDSEGVRITRTMRTTDALDDLMDFYLGMVPADMDAAEGVFMHYGRRVTGDRTPAD 84
Query: 290 LEMEEGDTIEVYQQQT 337
+ME+GD + + T
Sbjct: 85 YDMEDGDEVSFFPDGT 100
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,648,926
Number of Sequences: 37544
Number of extensions: 203462
Number of successful extensions: 311
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 302
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 309
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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