Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS334E05f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch...    27   1.7  
SPBC3E7.10 |fma1||methionine aminopeptidase Fma1 |Schizosaccharo...    27   1.7  
SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch...    26   3.9  
SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces pombe...    25   5.2  
SPBC685.05 |gpi15||pig-H |Schizosaccharomyces pombe|chr 2|||Manual     25   5.2  
SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit Ss...    25   6.8  
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    25   9.0  

>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 261

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +3

Query: 438 VEIERGHILTGFVRRKLEGGPG 503
           V++ERG  + G++ RKL GG G
Sbjct: 173 VDVERGRTVKGWLPRKLGGGLG 194


>SPBC3E7.10 |fma1||methionine aminopeptidase Fma1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 379

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -2

Query: 454 PRSISTSVNNVPLHLIP*QVCNEDTQIIII 365
           P+S+ TSVN +  H IP Q   ED  I+ I
Sbjct: 179 PKSVCTSVNEIICHGIPDQRPLEDGDIVNI 208


>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 979

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 323 LRRLFWVL*KSKEEDYNYLSVFITYLLWN 409
           L+  +W L  S E+   Y+S+    LLWN
Sbjct: 24  LKNDYWSLYLSPEQKRKYISILNDTLLWN 52


>SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 580

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = -3

Query: 318 LDFVKNEMHHTGRMFS*KLFLYIL-SLEYATMRQYAFERNSFP 193
           L+   NE +H    F  KLFLYI  ++     +Q A  R  +P
Sbjct: 349 LEMAFNEHYHEVMEFIEKLFLYIFKTIREKYAKQVAVVRQQYP 391


>SPBC685.05 |gpi15||pig-H |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 160

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -1

Query: 167 VFLNEPFTNNDVCLYITLVII*INNIQSIF 78
           +F+NE F   DVC Y+ + I     I  +F
Sbjct: 106 IFINEGFRKFDVCYYMGIAIESETEIHVVF 135


>SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit
           Ssl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 421

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +3

Query: 390 LHTCYGIKCSG 422
           LH CYG +CSG
Sbjct: 410 LHECYGCQCSG 420


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1687

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = +1

Query: 262  EFLRKHAARVMHFILNKIERAS*TILGFVKIQRRGL*LFECLHYIP-VMELSVVE 423
            +FL  H A    F + K ++ + ++  FVK     L  F C  ++P + ELS  E
Sbjct: 1278 DFLAYHKAAADTFEVAKTQKKTSSVYLFVKYLDPSLLDFFCSEFVPKITELSKEE 1332


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,220,598
Number of Sequences: 5004
Number of extensions: 45872
Number of successful extensions: 77
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)