Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS334E01f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF002196-4|AAB53979.1| 198|Caenorhabditis elegans Ribosomal pro... 236 8e-63
Z49131-3|CAA88976.1| 1211|Caenorhabditis elegans Hypothetical pr... 31 0.38
AF039720-5|AAB96696.1| 408|Caenorhabditis elegans Hypothetical ... 31 0.66
AL132948-22|CAD31825.2| 1408|Caenorhabditis elegans Hypothetical... 29 2.0
Z35604-5|CAA84680.2| 269|Caenorhabditis elegans Hypothetical pr... 29 2.7
AL132948-15|CAD31816.1| 1352|Caenorhabditis elegans Hypothetical... 29 2.7
AF098999-4|AAC68729.1| 659|Caenorhabditis elegans Hypothetical ... 29 2.7
AL132949-35|CAI70419.1| 466|Caenorhabditis elegans Hypothetical... 28 3.5
AL132949-34|CAB61101.3| 574|Caenorhabditis elegans Hypothetical... 28 3.5
AC024843-5|AAK70666.3| 740|Caenorhabditis elegans Hypothetical ... 27 6.2
AC006794-5|AAK68502.1| 821|Caenorhabditis elegans Hypothetical ... 27 6.2
AC024776-11|AAK68461.1| 349|Caenorhabditis elegans Hypothetical... 27 8.1
>AF002196-4|AAB53979.1| 198|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 19 protein.
Length = 198
Score = 236 bits (577), Expect = 8e-63
Identities = 106/173 (61%), Positives = 136/173 (78%)
Frame = +2
Query: 2 SLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRAR 181
+L+LQKRLA++V++CGK +VWLDPNE++EI+ NSRQ+IR+++ DGL+I+KPV VHSR R
Sbjct: 3 NLRLQKRLASAVLKCGKHRVWLDPNEVSEISGANSRQSIRRLVNDGLIIRKPVTVHSRFR 62
Query: 182 VRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHS 361
R+ EARRKGRH G+GKRRGTANARMP+K LW AKK+D+HLYH
Sbjct: 63 AREYEEARRKGRHTGYGKRRGTANARMPEKTLWIRRMRVLRNLLRRYRDAKKLDKHLYHE 122
Query: 362 LYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQAEARRNKVKEARKRREE 520
LY++AKGN FKNK+ L+EYI +KK E R K L+DQA+ARR+K KE+RKRREE
Sbjct: 123 LYLRAKGNNFKNKKNLIEYIFKKKTENKRAKQLADQAQARRDKNKESRKRREE 175
>Z49131-3|CAA88976.1| 1211|Caenorhabditis elegans Hypothetical protein
ZC373.4 protein.
Length = 1211
Score = 31.5 bits (68), Expect = 0.38
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +2
Query: 92 ANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCG 226
++T+S +N+R ++ D +K V H R ++E R+K R G
Sbjct: 1055 SDTSSSKNVRILLTDEQSVKSSVRSHPSVSTRDSSEERKKVRFAG 1099
>AF039720-5|AAB96696.1| 408|Caenorhabditis elegans Hypothetical
protein F33D11.2 protein.
Length = 408
Score = 30.7 bits (66), Expect = 0.66
Identities = 13/31 (41%), Positives = 22/31 (70%)
Frame = +2
Query: 428 KKAEKARTKMLSDQAEARRNKVKEARKRREE 520
KKAEK +++++ QAEA++N K R++E
Sbjct: 132 KKAEKVKSELVVPQAEAQKNTPKSVVARKKE 162
>AL132948-22|CAD31825.2| 1408|Caenorhabditis elegans Hypothetical
protein Y39B6A.30 protein.
Length = 1408
Score = 29.1 bits (62), Expect = 2.0
Identities = 15/62 (24%), Positives = 30/62 (48%)
Frame = +2
Query: 335 KIDRHLYHSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQAEARRNKVKEARKRR 514
K+++ + K K +NK + R KAE+ + K+ ++ +A K+K A + R
Sbjct: 938 KVEKEKVKAEEEKVKVEKERNKEKVKAEEERLKAEEEKVKIEKEKVKAEEQKIKAAEEER 997
Query: 515 EE 520
+
Sbjct: 998 RK 999
>Z35604-5|CAA84680.2| 269|Caenorhabditis elegans Hypothetical
protein ZK1058.5 protein.
Length = 269
Score = 28.7 bits (61), Expect = 2.7
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +2
Query: 104 SRQNIRKMIK-DGLVIKKPVAVHSRARVRKNTEARRKGR 217
S +N+RKMIK G V+ + ++ A +R EAR R
Sbjct: 170 SAENVRKMIKIGGSVVVRDYGINDHAMIRFGREARISDR 208
>AL132948-15|CAD31816.1| 1352|Caenorhabditis elegans Hypothetical
protein Y39B6A.18 protein.
Length = 1352
Score = 28.7 bits (61), Expect = 2.7
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = +2
Query: 371 KAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQAEARRNKVKEARKRREE 520
K K +NK + R KAE+ + K+ ++ +A K+K A + R +
Sbjct: 911 KVKVEKERNKEKVKAEEERLKAEEEKVKIEKEKVKAEEQKIKSAEEERRK 960
Score = 27.9 bits (59), Expect = 4.7
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +2
Query: 401 RVLMEYIHRKKAEKARTKMLSDQAEARRNKVKEARKRREE 520
R + E R KAE+ + K ++ +A KVK ++R +E
Sbjct: 882 RAIKEEEERVKAEREKVKKEEERLKAEEEKVKVEKERNKE 921
>AF098999-4|AAC68729.1| 659|Caenorhabditis elegans Hypothetical
protein W04C9.6 protein.
Length = 659
Score = 28.7 bits (61), Expect = 2.7
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = -2
Query: 211 LSTCFCVFADTSAGVYCYRFLDDETILDHLTDVLSGVGVCDLIDFI 74
++T FC+FAD S + R DD+ ++ + SG + D+I F+
Sbjct: 435 VNTIFCLFADASPAKWT-RLQDDDVAIEEEKEEYSG-SIEDIIKFL 478
>AL132949-35|CAI70419.1| 466|Caenorhabditis elegans Hypothetical
protein Y53F4B.27b protein.
Length = 466
Score = 28.3 bits (60), Expect = 3.5
Identities = 15/55 (27%), Positives = 29/55 (52%)
Frame = +2
Query: 356 HSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQAEARRNKVKEARKRREE 520
H+ + +GNV K + H K +KAR+ + ++ + K+KE K++E+
Sbjct: 80 HAATHEVQGNVTKKRTK-----HSKTRQKARSSVTLEKLAQKNQKMKEELKKQED 129
>AL132949-34|CAB61101.3| 574|Caenorhabditis elegans Hypothetical
protein Y53F4B.27a protein.
Length = 574
Score = 28.3 bits (60), Expect = 3.5
Identities = 15/55 (27%), Positives = 29/55 (52%)
Frame = +2
Query: 356 HSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQAEARRNKVKEARKRREE 520
H+ + +GNV K + H K +KAR+ + ++ + K+KE K++E+
Sbjct: 188 HAATHEVQGNVTKKRTK-----HSKTRQKARSSVTLEKLAQKNQKMKEELKKQED 237
>AC024843-5|AAK70666.3| 740|Caenorhabditis elegans Hypothetical
protein Y61A9LA.8 protein.
Length = 740
Score = 27.5 bits (58), Expect = 6.2
Identities = 20/65 (30%), Positives = 28/65 (43%)
Frame = +2
Query: 326 TAKKIDRHLYHSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQAEARRNKVKEAR 505
T+KK + L A + KR + H K+ +K + + Q E R K E
Sbjct: 88 TSKK-EEDKRKELEATAAAKEHEEKRRKEKEEHEKELQKEKEREKERQRERDREKRAEEE 146
Query: 506 KRREE 520
KRREE
Sbjct: 147 KRREE 151
>AC006794-5|AAK68502.1| 821|Caenorhabditis elegans Hypothetical
protein Y50D4A.1 protein.
Length = 821
Score = 27.5 bits (58), Expect = 6.2
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = +2
Query: 380 GNVFKNKRVLMEYIHRKKAEKARTKMLSDQAEARRNKVKEARKRREE 520
G FK +H K ++ +++SD A +KEARK E+
Sbjct: 482 GETFKFPAKFRRILHTSKTVRSVLEVVSDPENAEFLSIKEARKTVED 528
>AC024776-11|AAK68461.1| 349|Caenorhabditis elegans Hypothetical
protein Y41D4B.11 protein.
Length = 349
Score = 27.1 bits (57), Expect = 8.1
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = +2
Query: 392 KNKRVLMEYIHRKKAEKARTKMLSDQAEARRNKVKEARKRREE 520
K + + +Y + AEK + + + E NK+KEARK+RE+
Sbjct: 125 KQEEIDADYKIIEDAEKRKKEQEKREIE---NKIKEARKKREQ 164
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,253,155
Number of Sequences: 27780
Number of extensions: 253528
Number of successful extensions: 931
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 930
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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