Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS334D11f
         (395 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    26   2.4  
SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|ch...    25   4.3  
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom...    24   7.4  
SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual      24   9.8  

>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1727

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 71  RSSLLNTLKAKDACYKPFTASHAQTTSL 154
           ++ LL+T   ++ACY   TAS  Q + L
Sbjct: 460 QAELLSTKMRQEACYLQLTASRTQCSDL 487


>SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 411

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 143 FEHDLL*KVCSKRLLLSMYLEEKIVTHGSAT 51
           F+HDLL    SK    +MYL  +++  G  T
Sbjct: 299 FDHDLLRYPMSKIAAAAMYLSRRLLRRGPWT 329


>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 86  NTLKAKDACYKPFTASHAQTTSLKAMHTKE 175
           +T KAK    KPF + HA  +SLK  +  E
Sbjct: 7   STFKAK----KPFKSKHASKSSLKEKYKNE 32


>SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 478

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +1

Query: 43  QNPVADPCVTIFSSKYIESKRRLLQTFYS 129
           Q    D C+    SKY+ S  +L Q  YS
Sbjct: 103 QQSDVDVCIITNGSKYLNSTCQLAQLLYS 131


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,297,591
Number of Sequences: 5004
Number of extensions: 20340
Number of successful extensions: 41
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)