Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS334D11f
(395 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z19157-6|CAA79569.2| 1556|Caenorhabditis elegans Hypothetical pr... 31 0.40
Z78539-2|CAB01729.2| 410|Caenorhabditis elegans Hypothetical pr... 29 1.2
AC024753-1|AAF60456.1| 732|Caenorhabditis elegans Hypothetical ... 29 1.2
Z81579-4|CAE17915.1| 212|Caenorhabditis elegans Hypothetical pr... 29 1.6
Z75952-5|CAB00093.2| 149|Caenorhabditis elegans Hypothetical pr... 29 1.6
Z66499-4|CAA91301.1| 164|Caenorhabditis elegans Hypothetical pr... 29 1.6
Z49886-6|CAI79131.1| 149|Caenorhabditis elegans Hypothetical pr... 29 1.6
Z49886-5|CAA90055.1| 152|Caenorhabditis elegans Hypothetical pr... 29 1.6
U58760-7|AAK31463.1| 188|Caenorhabditis elegans Hypothetical pr... 29 1.6
U55854-7|AAK68158.1| 166|Caenorhabditis elegans Hypothetical pr... 29 1.6
U55854-6|AAK68161.1| 197|Caenorhabditis elegans Hypothetical pr... 29 1.6
AC024830-9|ABQ13052.1| 1594|Caenorhabditis elegans Hypothetical ... 28 2.1
U42830-2|AAC48274.1| 243|Caenorhabditis elegans Hypothetical pr... 28 2.8
U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical p... 28 2.8
AC006610-4|AAK85450.1| 246|Caenorhabditis elegans Hypothetical ... 27 4.9
>Z19157-6|CAA79569.2| 1556|Caenorhabditis elegans Hypothetical
protein ZC84.1 protein.
Length = 1556
Score = 30.7 bits (66), Expect = 0.40
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -2
Query: 310 VCCWSTDCTNICICLTGRCCSLACMLLQSSMLF 212
VC ++TDC + C TG C L+ +L+ S +
Sbjct: 107 VCQYNTDCLSGMYCATGLCSCLSTYILRESYCY 139
>Z78539-2|CAB01729.2| 410|Caenorhabditis elegans Hypothetical
protein C31E10.3 protein.
Length = 410
Score = 29.1 bits (62), Expect = 1.2
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -2
Query: 337 NASEXXPEAVCCWSTDCTNICICLT 263
N SE E + W T+CT +C LT
Sbjct: 37 NKSEVTTETIELWPTNCTKVCSILT 61
>AC024753-1|AAF60456.1| 732|Caenorhabditis elegans Hypothetical
protein Y23H5B.6 protein.
Length = 732
Score = 29.1 bits (62), Expect = 1.2
Identities = 20/70 (28%), Positives = 31/70 (44%)
Frame = +1
Query: 31 KNLRQNPVADPCVTIFSSKYIESKRRLLQTFYSKSCSNYKFKGNAHKGGQGVTDKNLDEL 210
+ +++ A+ I SK K+ + + +K N K K N K G D L+EL
Sbjct: 570 EQIKEEEAAEKISNITISKTKPLKKAVTKVSAAKKILNKKLKVNTKKTF-GAEDDELEEL 628
Query: 211 ETA*KTATAY 240
E T T+Y
Sbjct: 629 EEGPSTITSY 638
>Z81579-4|CAE17915.1| 212|Caenorhabditis elegans Hypothetical
protein R13H4.8 protein.
Length = 212
Score = 28.7 bits (61), Expect = 1.6
Identities = 9/23 (39%), Positives = 10/23 (43%)
Frame = -2
Query: 307 CCWSTDCTNICICLTGRCCSLAC 239
CC + CT C C CC C
Sbjct: 103 CCRTCCCTRCCTCCRPCCCGCGC 125
>Z75952-5|CAB00093.2| 149|Caenorhabditis elegans Hypothetical
protein F29D10.2 protein.
Length = 149
Score = 28.7 bits (61), Expect = 1.6
Identities = 9/23 (39%), Positives = 10/23 (43%)
Frame = -2
Query: 307 CCWSTDCTNICICLTGRCCSLAC 239
CC + CT C C CC C
Sbjct: 85 CCRTCCCTRCCTCCRPCCCGCGC 107
>Z66499-4|CAA91301.1| 164|Caenorhabditis elegans Hypothetical
protein T01B7.8 protein.
Length = 164
Score = 28.7 bits (61), Expect = 1.6
Identities = 9/23 (39%), Positives = 10/23 (43%)
Frame = -2
Query: 307 CCWSTDCTNICICLTGRCCSLAC 239
CC + CT C C CC C
Sbjct: 101 CCRTCCCTRCCTCCRPCCCGCGC 123
>Z49886-6|CAI79131.1| 149|Caenorhabditis elegans Hypothetical
protein C06A1.7 protein.
Length = 149
Score = 28.7 bits (61), Expect = 1.6
Identities = 9/23 (39%), Positives = 10/23 (43%)
Frame = -2
Query: 307 CCWSTDCTNICICLTGRCCSLAC 239
CC + CT C C CC C
Sbjct: 87 CCRTCCCTRCCTCCRPCCCGCGC 109
>Z49886-5|CAA90055.1| 152|Caenorhabditis elegans Hypothetical
protein C06A1.6 protein.
Length = 152
Score = 28.7 bits (61), Expect = 1.6
Identities = 9/23 (39%), Positives = 10/23 (43%)
Frame = -2
Query: 307 CCWSTDCTNICICLTGRCCSLAC 239
CC + CT C C CC C
Sbjct: 90 CCRTCCCTRCCTCCRPCCCGCGC 112
>U58760-7|AAK31463.1| 188|Caenorhabditis elegans Hypothetical
protein C27A2.5 protein.
Length = 188
Score = 28.7 bits (61), Expect = 1.6
Identities = 9/23 (39%), Positives = 10/23 (43%)
Frame = -2
Query: 307 CCWSTDCTNICICLTGRCCSLAC 239
CC + CT C C CC C
Sbjct: 102 CCRTCCCTRCCTCCRPCCCGCGC 124
>U55854-7|AAK68158.1| 166|Caenorhabditis elegans Hypothetical
protein C04G6.10 protein.
Length = 166
Score = 28.7 bits (61), Expect = 1.6
Identities = 9/23 (39%), Positives = 10/23 (43%)
Frame = -2
Query: 307 CCWSTDCTNICICLTGRCCSLAC 239
CC + CT C C CC C
Sbjct: 102 CCRTCCCTRCCTCCRPCCCGCGC 124
>U55854-6|AAK68161.1| 197|Caenorhabditis elegans Hypothetical
protein C04G6.7 protein.
Length = 197
Score = 28.7 bits (61), Expect = 1.6
Identities = 9/23 (39%), Positives = 10/23 (43%)
Frame = -2
Query: 307 CCWSTDCTNICICLTGRCCSLAC 239
CC + CT C C CC C
Sbjct: 103 CCRTCCCTRCCTCCRPCCCGCGC 125
>AC024830-9|ABQ13052.1| 1594|Caenorhabditis elegans Hypothetical
protein Y55F3BR.2 protein.
Length = 1594
Score = 28.3 bits (60), Expect = 2.1
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = -2
Query: 379 IEMCAQIFSSNQTNNASEXXPEAVCCWSTDCTNICICLTGRCCSLA 242
++ Q+F S T+ + VC ++TDC C G+C L+
Sbjct: 96 VDPAMQVFHSQGTSGSGRVGD--VCSFNTDCLGGMFCAIGQCRCLS 139
>U42830-2|AAC48274.1| 243|Caenorhabditis elegans Hypothetical
protein C53B7.3 protein.
Length = 243
Score = 27.9 bits (59), Expect = 2.8
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = -2
Query: 370 CAQIFSSNQTNNASEXXPE-AVCCWSTDCTNICICLTGRC 254
C +S+N N+ S+ + C +STDC + +C G C
Sbjct: 106 CQSSYSNNMYNSNSQYSNSGSTCRYSTDCYSGQMCSNGVC 145
>U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical
protein F48E3.8a protein.
Length = 2427
Score = 27.9 bits (59), Expect = 2.8
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = -2
Query: 352 SNQTNNASEXXPEAVCCWSTDCTNICICLTGRC 254
+++ N S P+ C + ++CT IC+ RC
Sbjct: 1939 NDRYNVRSRSYPKTFCTFDSECTGGSICIDKRC 1971
>AC006610-4|AAK85450.1| 246|Caenorhabditis elegans Hypothetical
protein C30F12.4 protein.
Length = 246
Score = 27.1 bits (57), Expect = 4.9
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = -3
Query: 240 VCCCSLLCCFELV 202
VCCC L CC L+
Sbjct: 200 VCCCPLTCCLPLI 212
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,418,417
Number of Sequences: 27780
Number of extensions: 123325
Number of successful extensions: 345
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 305
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 345
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 609015246
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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