Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS334D04f
         (333 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15E1.03 |rpl36a||60S ribosomal protein L36/L42|Schizosacchar...   112   2e-26
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    28   0.33 
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|...    25   2.3  
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|...    25   3.0  
SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met...    25   4.0  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    24   5.3  
SPAC17G8.13c |mst2||histone acetyltransferase Mst2|Schizosacchar...    24   7.0  
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    24   7.0  
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo...    23   9.2  

>SPAC15E1.03 |rpl36a||60S ribosomal protein
           L36/L42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 106

 Score =  112 bits (269), Expect = 2e-26
 Identities = 48/81 (59%), Positives = 59/81 (72%)
 Frame = +1

Query: 52  SQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXXXXXXXXIVLRLECADCKVRSQVAL 231
           +QYKK  +   AQG+RRYDRKQ G+GGQ+KP+F         +VLRLEC  CK ++Q+ L
Sbjct: 26  TQYKKGPDSKLAQGKRRYDRKQSGFGGQTKPVFHKKAKVTKKVVLRLECVSCKYKNQLVL 85

Query: 232 KRCKHFELGGDKKRKGQMIQF 294
           KRCKHFELGG+KK KG  IQF
Sbjct: 86  KRCKHFELGGEKKTKGAAIQF 106


>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1347

 Score = 28.3 bits (60), Expect = 0.33
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 92  PWAACLSLDFLYCDTLCTLWHL 27
           P A  + L +LY DTL + WHL
Sbjct: 679 PLAVAILLHYLYTDTLLSPWHL 700


>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1402

 Score = 25.4 bits (53), Expect = 2.3
 Identities = 16/63 (25%), Positives = 22/63 (34%)
 Frame = -3

Query: 205  NQHTQDGAQFS*WFLPSF*RWVWTDHRNPAVYDHNVFYPGQRAFPWTFCTVIPCVLCGIY 26
            NQ   D      W L     W WT   + ++Y +  +    R F          VLCG  
Sbjct: 1212 NQSNWDVFSIGLWALSCLTFWFWTGVYSQSLYTYEFYKSASRIFR---TPNFWAVLCGTI 1268

Query: 25   IFC 17
            + C
Sbjct: 1269 VSC 1271


>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 310

 Score = 25.0 bits (52), Expect = 3.0
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = +2

Query: 20  KNVNATKYTRYHSTKSPRKGTLPRVEDVMIVNSRVTVVSPNPSSKRRQKPLRKLCSVLS 196
           K  +A K  R H+  +     +  V        ++ V SPNP S +R+K  R+  S+ S
Sbjct: 241 KEQHAKKPKRKHTRSTVPTSNVEPVSQPQPSPDKI-VSSPNPPSAKREKKKRRKSSMSS 298


>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
           metabolism|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 811

 Score = 24.6 bits (51), Expect = 4.0
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 56  STKSPRKGTLPRVEDVMIVNSRVTVVSPN 142
           ST+ PR  T    E V +++ R+ V++PN
Sbjct: 191 STEQPRMHTFSLSELVPLLSERLYVINPN 219


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 24.2 bits (50), Expect = 5.3
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +2

Query: 68  PRKGTLPRVEDVMIVNSRVTVVSPNPSS 151
           P+K + P+V  +M      +VV+P+P+S
Sbjct: 620 PQKPSAPQVTRLMAPQDSSSVVTPSPTS 647


>SPAC17G8.13c |mst2||histone acetyltransferase
           Mst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 407

 Score = 23.8 bits (49), Expect = 7.0
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 233 FNATCDLTLQSAHSRRSTIFLVVFAFFL 150
           +N +C LTL     R   +FL+ F++ L
Sbjct: 236 YNVSCILTLPIYQRRGYGVFLIDFSYLL 263


>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1158

 Score = 23.8 bits (49), Expect = 7.0
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = +2

Query: 65  SPRKGTLPRVEDVMIVNSRVTVVSPNP 145
           SP +G+LPR     ++ + +++   NP
Sbjct: 735 SPSRGSLPRRPSSALLTNPISITKSNP 761


>SPBC1683.09c |frp1||ferric-chelate reductase
           Frp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 564

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -2

Query: 320 MVLFIRSI*NWIICPFLFLSPPSSKCLHLFNA 225
           M + I S+  W I PF   S PS   + LF A
Sbjct: 304 MYINIPSLSYWQIHPFTIASVPSDDFIELFVA 335


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,254,535
Number of Sequences: 5004
Number of extensions: 22594
Number of successful extensions: 75
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 93942212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)